Factsheet for Solyc08g005980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	Solyc02g093290.2.1	AT2G23420.1	21798944
AT2G16800.1	Solyc03g044430.2.1	AT2G23420.1	21798944
AT2G16800.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G16800.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038459	Potato	plastid	84.86	85.3
CDY17509	Canola	extracellular	15.93	75.31
Solyc01g111620.2.1	Tomato	plastid	71.54	72.68
KRH39780	Soybean	plastid	58.75	68.18
KRH24328	Soybean	plastid	63.19	65.23
CDY26789	Canola	plastid	61.88	64.23
CDY47481	Canola	plastid	61.1	63.93
GSMUA_Achr3P00650_001	Banana	mitochondrion	41.78	63.49
Bra037287.1-P	Field mustard	plastid	60.57	63.39
VIT_03s0038g02470.t01	Wine grape	plastid	62.92	63.09
VIT_18s0001g14840.t01	Wine grape	plastid	62.66	62.66
KRH60695	Soybean	plastid	61.36	62.01
KRH51392	Soybean	plastid	59.53	61.46
AT2G16800.1	Thale cress	plastid	59.53	61.29
Bra011583.1-P	Field mustard	plastid	55.87	60.11
CDX69110	Canola	plastid	56.66	59.94
AT4G35080.3	Thale cress	plastid	57.96	57.07
CDY52650	Canola	plastid	56.4	56.99
CDX76312	Canola	cytosol	8.62	56.9
Bra034673.1-P	Field mustard	mitochondrion	13.32	56.67
Os06t0116400-01	Rice	mitochondrion, plastid	53.79	56.13
Zm00001d027721_P001	Maize	plastid	51.96	55.9
EER92833	Sorghum	plastid	52.22	55.4
GSMUA_Achr1P07500_001	Banana	plastid	50.65	55.27
Os03t0156700-01	Rice	mitochondrion	50.13	53.93
EER89091	Sorghum	mitochondrion	52.74	53.58
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.91	53.57
TraesCS4A01G033400.1	Wheat	mitochondrion	50.91	53.42
TraesCS4D01G271200.1	Wheat	plastid	50.65	52.86
TraesCS7D01G044600.1	Wheat	plastid	49.87	48.97
TraesCS4A01G435600.1	Wheat	plastid	49.09	48.45
GSMUA_AchrUn_...	Banana	plastid	38.9	48.38
TraesCS7A01G049500.1	Wheat	plastid	49.35	48.21
HORVU4Hr1G072520.2	Barley	plastid	50.91	43.05
CDY17508	Canola	extracellular	20.89	34.04

Protein Annotations

EnsemblPlants:Solyc08g005980.2.1	EnsemblPlantsGene:Solyc08g005980.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33876
PANTHER:PTHR33876:SF2	PFAM:PF13386	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276BC60	UniProt:K4CI87
MapMan:24.2.6.3	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:749599..755094

Molecular Weight (calculated)

41071.3 Da

IEP (calculated)

10.018

GRAVY (calculated)

0.357

Length

383 amino acids

Sequence
(BLAST)

001: MEKLIYSTTQ CPSKLHHQNR SHPLLPTRIR HVDFKLPSLL RLESRRVNSL SIKCSHDSSS SFSGTQNGYE ENPFVFPGSA YGSGSKTHFL KLIGERISQQ
101: NKALSASTIV LLSAVFVMLI HPVIVSPAFA SFQAAAKAGG PAAAALTSRF VRNELLSSAW TGFFAGCLHT LSGPDHLAAL APLSIGRTRM ESAAVGALWG
201: CGHDAGQLIF GLLFLLLKDR LHIEVIRTWG TRVVGFTLLV IGAMGIKEAS EVNSQFVPLE NGDSDVSVYE DINTPVIGKK KKKVGFATFA TGIVHGLQPD
301: ALLIILPALA LPSRLAGAAF LGMFLVGTVM AMGSYTVFIG SCSQALKDRV PRITEKLTWA SSLIAIGLGL AIIISQFFGF SLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.