CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 3
mitochondrion 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69110	Canola	plastid	40.43	26.24
GSMUA_Achr3P00650_001	Banana	mitochondrion	28.09	26.19
GSMUA_AchrUn_...	Banana	plastid	34.04	25.97
AT4G35080.3	Thale cress	plastid	41.7	25.19
CDY52650	Canola	plastid	40.43	25.07
CDY26789	Canola	plastid	38.72	24.66
CDY47481	Canola	plastid	37.02	23.77
PGSC0003DMT400015782	Potato	plastid	35.32	22.25
Solyc01g111620.2.1	Tomato	plastid	34.89	21.75
Os06t0116400-01	Rice	mitochondrion, plastid	33.62	21.53
PGSC0003DMT400038459	Potato	plastid	34.89	21.52
GSMUA_Achr1P07500_001	Banana	plastid	31.91	21.37
Solyc08g005980.2.1	Tomato	plastid	34.04	20.89
TraesCS4A01G033400.1	Wheat	mitochondrion	31.49	20.27
Zm00001d027721_P001	Maize	plastid	30.64	20.22
VIT_18s0001g14840.t01	Wine grape	plastid	32.77	20.1
EER92833	Sorghum	plastid	30.64	19.94
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	30.64	19.78
EER89091	Sorghum	mitochondrion	31.49	19.63
TraesCS4D01G271200.1	Wheat	plastid	30.64	19.62
Os03t0156700-01	Rice	mitochondrion	28.94	19.1
TraesCS7D01G044600.1	Wheat	plastid	31.06	18.72
TraesCS7A01G049500.1	Wheat	plastid	31.06	18.62
TraesCS4A01G435600.1	Wheat	plastid	29.79	18.04
HORVU4Hr1G072520.2	Barley	plastid	28.94	15.01
CDX76312	Canola	cytosol	2.13	8.62
CDY17509	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY17508	EnsemblPlantsGene:GSBRNA2T00095704001	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	ProteinID:CDY17508	ProteinID:CDY17508.1
UniParc:UPI0004EF39F0	UniProt:A0A078FYV3	MapMan:24.2.6.3	:	:	:

Description

BnaC03g65550DBnaC03g65550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYV3]

Coordinates

chrLK032074:+:427127..432005

Molecular Weight (calculated)

25370.1 Da

IEP (calculated)

10.167

GRAVY (calculated)

0.246

Length

235 amino acids

Sequence
(BLAST)

001: MLIGLGVIYI GCLRYLLHTR PDLSFSVGVL SRYMQEPKVS HGVALKQVLR YLRGTTNQTN ISLNGSPSSS PVAGESNPNH GFFQRIVTTA DEQRKVFTLG
101: LCNYLIRALA YLCVCVSMQT LSTGTVILFS AVDVLLLNPL LASPAYATFQ TVAKSGWLTS AWTGFLAGCL HTLSGPDHLA ALAPLSIGRT KMESASVGAL
201: WGCGHDAGQV IFGLLSNGNQ RSFRKALMPL PRRRK

Best Arabidopsis Sequence Match ( AT4G35080.3 )
(BLAST)

001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKETYEKFVY SLLEKKIPRI TKSSNFTLST GTVILISAVA VLLLNPLLAP PAFASFQTAA KSGWLTSAWT GFLAGCLHTL SGPDHLAALA PLSIGRSKME
201: SAAVGALWGC GHDAGQVIFG LLFLLLKDRL HIEVLQTWGT RIVGLTLVII GAMGIKEASE IPEPCVALET DISMVSTEKE ALPLPKKKKI GFATFATGVV
301: HGLQPDALMI VLPALALPSR LAGSAFLIMF LVGTVIAMGS YTAFIGSCSE ALKEKVPRIT EKLTWVSSLV AIGLGLGIVI SPFFGFSLY

Arabidopsis Description

High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.