Factsheet for PGSC0003DMT400038459

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT2G16800.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G16800.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005980.2.1	Tomato	plastid	85.3	84.86
CDY17509	Canola	extracellular	16.01	75.31
PGSC0003DMT400015782	Potato	plastid	70.87	72.39
KRH39780	Soybean	plastid	58.01	66.97
CDY47481	Canola	plastid	61.42	63.93
GSMUA_Achr3P00650_001	Banana	mitochondrion	41.99	63.49
VIT_18s0001g14840.t01	Wine grape	plastid	63.78	63.45
CDY26789	Canola	plastid	61.42	63.41
Bra037287.1-P	Field mustard	plastid	60.89	63.39
VIT_03s0038g02470.t01	Wine grape	plastid	63.52	63.35
KRH24328	Soybean	plastid	61.68	63.34
KRH60695	Soybean	plastid	62.73	63.06
KRH51392	Soybean	plastid	59.84	61.46
AT2G16800.1	Thale cress	plastid	59.06	60.48
Bra011583.1-P	Field mustard	plastid	54.86	58.71
CDX69110	Canola	plastid	54.86	57.73
Os06t0116400-01	Rice	mitochondrion, plastid	54.33	56.4
Bra034673.1-P	Field mustard	mitochondrion	13.12	55.56
Zm00001d027721_P001	Maize	plastid	51.71	55.34
AT4G35080.3	Thale cress	plastid	56.43	55.27
CDX76312	Canola	cytosol	8.4	55.17
CDY52650	Canola	plastid	54.86	55.15
EER92833	Sorghum	plastid	50.92	53.74
GSMUA_Achr1P07500_001	Banana	plastid	49.08	53.28
TraesCS4A01G033400.1	Wheat	mitochondrion	50.66	52.88
TraesCS4D01G271200.1	Wheat	plastid	50.92	52.86
Os03t0156700-01	Rice	mitochondrion	49.34	52.81
EER89091	Sorghum	mitochondrion	52.23	52.79
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.39	52.75
TraesCS7D01G044600.1	Wheat	plastid	49.87	48.72
GSMUA_AchrUn_...	Banana	plastid	38.85	48.05
TraesCS4A01G435600.1	Wheat	plastid	48.82	47.94
TraesCS7A01G049500.1	Wheat	plastid	49.08	47.7
HORVU4Hr1G072520.2	Barley	plastid	51.71	43.49
CDY17508	Canola	extracellular	21.52	34.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400038459	EnsemblPlantsGene:PGSC0003DMG400014843	EntrezGene:102598080	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	PGSC:PGSC0003DMG400014843	RefSeq:XP_006357017.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00029636AB	UniProt:M1B6W6	MapMan:24.2.6.3	:	:

Description

Chloroplast zebra-necrosis protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014843]

Coordinates

chr8:-:2694245..2700010

Molecular Weight (calculated)

40865.2 Da

IEP (calculated)

10.110

GRAVY (calculated)

0.400

Length

381 amino acids

Sequence
(BLAST)

001: MEKLIYSTTP FPSKLHHQNP SHPLLPTRIR HVDFKLPSLL RLESRRVKSL SIKCCHDSSS FPETQNGYEK NPFVFPGSAY GSGSKTHFLK LIGERISQQN
101: KVLSASTIVL LSAVFVMLIH PVIVSPAFAS FQAAAKAGGP AAAALGSRFV RNELLSSAWT GFFAGCLHTL SGPDHLAALA PLSIGRTRME SAAVGALWGC
201: GHDAGQLIFG LLFLLLKDRL HIEVIRTWGT RVVGFTLLVI GAMGIKEASE INSQFVALEN GDSDVSVYEG INTPVIGKKK KVGFTTFATG IVHGLQPDAL
301: LIILPALALP SRLAGAAFLG MFLVGTVMAM GSYTVFIGSC SQALKDRVPR ITEKLTWASS LIAIGLGLAI IISQFFGFSL Y

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.