Factsheet for VIT_03s0038g02470.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39780	Soybean	plastid	62.57	72.42
KRH24328	Soybean	plastid	68.32	70.35
GSMUA_Achr3P00650_001	Banana	mitochondrion	45.29	68.65
PGSC0003DMT400015782	Potato	plastid	65.97	67.56
Solyc01g111620.2.1	Tomato	plastid	66.49	67.37
KRH60695	Soybean	plastid	66.49	67.02
KRH51392	Soybean	plastid	63.87	65.77
VIT_18s0001g14840.t01	Wine grape	plastid	63.87	63.71
PGSC0003DMT400038459	Potato	plastid	63.35	63.52
Solyc08g005980.2.1	Tomato	plastid	63.09	62.92
GSMUA_Achr1P07500_001	Banana	plastid	56.28	61.25
Os06t0116400-01	Rice	mitochondrion, plastid	57.33	59.67
Zm00001d027721_P001	Maize	plastid	53.66	57.58
EER92833	Sorghum	plastid	53.4	56.51
Os03t0156700-01	Rice	mitochondrion	52.09	55.9
Bra034673.1-P	Field mustard	mitochondrion	13.09	55.56
EER89091	Sorghum	mitochondrion	54.19	54.91
GSMUA_AchrUn_...	Banana	plastid	43.98	54.55
CDX76312	Canola	cytosol	8.12	53.45
TraesCS4A01G033400.1	Wheat	mitochondrion	50.79	53.15
TraesCS4D01G271200.1	Wheat	plastid	50.52	52.59
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.0	52.47
TraesCS7D01G044600.1	Wheat	plastid	51.05	50.0
TraesCS4A01G435600.1	Wheat	plastid	50.52	49.74
TraesCS7A01G049500.1	Wheat	plastid	50.0	48.72
HORVU4Hr1G072520.2	Barley	plastid	50.52	42.6

Protein Annotations

EntrezGene:100250325	wikigene:100250325	MapMan:24.2.6.3	EMBL:AM453529	ProteinID:CAN67732	ProteinID:CAN67732.1
ProteinID:CCB60617	ProteinID:CCB60617.1	UniProt:F6I101	EMBL:FN596508	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100250325	wikigene:LOC100250325	PFAM:PF13386	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2
TIGR:TC54600	TMHMM:TMhelix	UniParc:UPI0001982E0F	ArrayExpress:VIT_03s0038g02470	EnsemblPlantsGene:VIT_03s0038g02470	EnsemblPlants:VIT_03s0038g02470.t01
unigene:Vvi.717	RefSeq:XP_002279051	RefSeq:XP_002279051.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:1722162..1725633

Molecular Weight (calculated)

40228.3 Da

IEP (calculated)

8.753

GRAVY (calculated)

0.488

Length

382 amino acids

Sequence
(BLAST)

001: MERLIYSYSP IPSKVRLKPF SPLSPIPSLP PFDSSRLCFS SFSCTHLKRL NASTPHSSFL CSLAPLLASS SSSSAFQAES PDESVSPPSS LPQIVAGASQ
101: QRKAATAGTI TLLSALTILL IHPVLAQPAF ATFQTAAKTG GPAAATVGGQ LIRTELLSSA WTGFFAGCLH TLSGPDHLAA LAPLSVGRSR MESAAVGALW
201: GCGHDAGQMI FGLLFLLLKD RLHIEVIRTW GTRVVGFTLL VIGAMGIREA SEVPTPCVAV ENGECDVGTY EALENPTAKK KKIGFATFAT GIVHGLQPDA
301: LMMVLPALAL PSRLAGAAFL VMFLLGTVVA MASYTVFIGS CSQALKERVP RITEKLTWAS SLIAIALGFA ILISQFFGFS LY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.