CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04597
KRH22653
KRH26664
KRH28456
KRH57934
KRH63322
KRH65384
KRH76164
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	KRH04597	AT2G23420.1	21798944
AT2G16800.1	KRH28456	AT2G23420.1	21798944
AT2G16800.1	KRH57934	AT2G23420.1	21798944
AT2G16800.1	KRH63322	AT2G23420.1	21798944
AT2G16800.1	KRH77015	AT2G23420.1	21798944
AT2G16800.1	KRH65384	AT3G60600.1	21798944
AT2G16800.1	KRH76164	AT3G60600.1	21798944
AT2G16800.1	KRH22653	AT5G22290.1	21798944
AT2G16800.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39780	Soybean	plastid	77.9	87.58
KRH51392	Soybean	plastid	71.7	71.7
KRH60695	Soybean	plastid	73.05	71.5
VIT_03s0038g02470.t01	Wine grape	plastid	70.35	68.32
PGSC0003DMT400015782	Potato	plastid	67.66	67.29
Solyc01g111620.2.1	Tomato	plastid	67.12	66.05
GSMUA_Achr3P00650_001	Banana	mitochondrion	44.47	65.48
AT2G16800.1	Thale cress	plastid	63.88	63.71
Solyc08g005980.2.1	Tomato	plastid	65.23	63.19
PGSC0003DMT400038459	Potato	plastid	63.34	61.68
Os06t0116400-01	Rice	mitochondrion, plastid	59.3	59.95
GSMUA_Achr1P07500_001	Banana	plastid	55.26	58.4
Bra034673.1-P	Field mustard	mitochondrion	13.75	56.67
Zm00001d027721_P001	Maize	plastid	53.64	55.9
EER89091	Sorghum	mitochondrion	56.06	55.17
Os03t0156700-01	Rice	mitochondrion	52.83	55.06
EER92833	Sorghum	plastid	53.37	54.85
AT4G35080.3	Thale cress	plastid	57.41	54.76
CDX76312	Canola	cytosol	8.36	53.45
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.94	51.92
TraesCS4A01G033400.1	Wheat	mitochondrion	50.67	51.51
TraesCS4D01G271200.1	Wheat	plastid	50.94	51.5
TraesCS7A01G049500.1	Wheat	plastid	52.56	49.74
TraesCS7D01G044600.1	Wheat	plastid	52.29	49.74
GSMUA_AchrUn_...	Banana	plastid	40.97	49.35
TraesCS4A01G435600.1	Wheat	plastid	51.48	49.23
HORVU4Hr1G072520.2	Barley	plastid	50.94	41.72

Protein Annotations

EMBL:ACUP02007174	EnsemblPlants:KRH24328	EnsemblPlantsGene:GLYMA_12G033600	EntrezGene:100799220	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:KRH24328	ProteinID:KRH24328.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000233CA5D	UniProt:I1LPU0	MapMan:24.2.6.3	:

Description

hypothetical protein

Coordinates

chr12:-:2527643..2529980

Molecular Weight (calculated)

39307.2 Da

IEP (calculated)

9.380

GRAVY (calculated)

0.452

Length

371 amino acids

Sequence
(BLAST)

001: MDRLLSSCSS SLNTNLKPFS LLPRFDSVRF NPFSSTRCSF TSISSKHETP PPLSSSPPKT LPPLSPSPLI HFHASVPPSQ PLTPNNFQNP KAITARTFAI
101: LSSLVLLLIQ PAFAPAAFAT FQNAAKTGGP AAAAVGGKLI RTELLTSAWT GFFAGCLHTL SGPDHLAALA PLSIGRTRME SAAVGALWGC GHDAGQVIFG
201: LIFLLLKDRL HIEIIRTWGT RVVGLTLLVI GAMGIKEASE VPTPCVALEN GECDVSVYES RDSNPVVGKK KIGFATFATG IVHGLQPDAL MMVLPALALP
301: SRLAGAAFLI MFLLGTVVAM GSYTVFIGSC SEALKDRVPR ITEKLTWASS LIAIALGFAI IISQFFGFSL Y

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.