Factsheet for PGSC0003DMT400015782

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010254
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	PGSC0003DMT400010254	AT2G23420.1	21798944
AT2G16800.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G16800.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111620.2.1	Tomato	plastid	97.59	96.55
CDY17509	Canola	extracellular	15.82	72.84
PGSC0003DMT400038459	Potato	plastid	72.39	70.87
KRH39780	Soybean	plastid	62.2	70.3
CDY26789	Canola	plastid	67.02	67.75
KRH24328	Soybean	plastid	67.29	67.66
CDY47481	Canola	plastid	66.22	67.49
Bra037287.1-P	Field mustard	plastid	66.22	67.49
VIT_03s0038g02470.t01	Wine grape	plastid	67.56	65.97
AT2G16800.1	Thale cress	plastid	65.15	65.32
KRH51392	Soybean	plastid	64.08	64.42
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.43	64.29
KRH60695	Soybean	plastid	64.61	63.59
Bra011583.1-P	Field mustard	plastid	60.32	63.2
VIT_18s0001g14840.t01	Wine grape	plastid	63.54	61.88
CDX69110	Canola	plastid	60.05	61.88
AT4G35080.3	Thale cress	plastid	62.2	59.64
CDY52650	Canola	plastid	60.59	59.63
Os06t0116400-01	Rice	mitochondrion, plastid	56.84	57.77
Zm00001d027721_P001	Maize	plastid	54.16	56.74
Os03t0156700-01	Rice	mitochondrion	53.89	56.46
GSMUA_Achr1P07500_001	Banana	plastid	52.81	56.13
EER92833	Sorghum	plastid	53.89	55.68
EER89091	Sorghum	mitochondrion	54.96	54.38
TraesCS4A01G033400.1	Wheat	mitochondrion	53.08	54.25
TraesCS4D01G271200.1	Wheat	plastid	53.08	53.95
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	52.55	53.85
CDX76312	Canola	cytosol	8.31	53.45
Bra034673.1-P	Field mustard	mitochondrion	12.87	53.33
TraesCS7D01G044600.1	Wheat	plastid	53.08	50.77
TraesCS4A01G435600.1	Wheat	plastid	51.74	49.74
GSMUA_AchrUn_...	Banana	plastid	41.02	49.68
TraesCS7A01G049500.1	Wheat	plastid	51.74	49.23
HORVU4Hr1G072520.2	Barley	plastid	50.94	41.94
CDY17508	Canola	extracellular	22.25	35.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400015782	EnsemblPlantsGene:PGSC0003DMG400006169	EntrezGene:102600975	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PGSC:PGSC0003DMG400006169	RefSeq:XP_006359702.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294AF7A	UniProt:M1A6K7	MapMan:24.2.6.3	:	:	:

Description

Chloroplast zebra-necrosis protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006169]

Coordinates

chr1:-:87600173..87604333

Molecular Weight (calculated)

39477.5 Da

IEP (calculated)

9.519

GRAVY (calculated)

0.448

Length

373 amino acids

Sequence
(BLAST)

001: MERLIYTNSL PSKLHLKTFP RLPKLHFSSL LHVESRRPNS LSCKFSSSGS TPSSRFGDGH VGNSSTSKDL QDGSGSKPHL LNWVAEILSQ QRKVVSTSTV
101: VLLSAMLVML LHPVIVSPAF ASFQTAAKTG GPAAAAVGTQ LVRNELLTSA WAGFFAGCLH TLSGPDHLAA LAPLSIGRTP MESAAVGALW GCGHDAGQLI
201: FGLLFLLLKD RLHIEVIRTW GTRVVGFTLL VIGAMGIKEA SEVATPCVAL ENGDCDVSVY EGIDTPVIGK KKKIGFATFA TGIVHGLQPD ALMMILPALA
301: LPSRMAGAAF LGMFLVGTVI AMGSYTVFIG SCSQALKDRV PRITEKLTWA SSLIAIGLGI AIIVSQFFGF SLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.