Factsheet for Solyc01g111620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g093290.2.1
Solyc03g044430.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	Solyc02g093290.2.1	AT2G23420.1	21798944
AT2G16800.1	Solyc03g044430.2.1	AT2G23420.1	21798944
AT2G16800.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT2G16800.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015782	Potato	plastid	96.55	97.59
CDY17509	Canola	extracellular	15.65	72.84
Solyc08g005980.2.1	Tomato	plastid	72.68	71.54
KRH39780	Soybean	plastid	61.54	70.3
CDY26789	Canola	plastid	66.84	68.29
CDY47481	Canola	plastid	66.05	68.03
Bra037287.1-P	Field mustard	plastid	66.05	68.03
KRH24328	Soybean	plastid	66.05	67.12
VIT_03s0038g02470.t01	Wine grape	plastid	67.37	66.49
AT2G16800.1	Thale cress	plastid	64.19	65.05
KRH51392	Soybean	plastid	63.4	64.42
GSMUA_Achr3P00650_001	Banana	mitochondrion	42.97	64.29
KRH60695	Soybean	plastid	63.93	63.59
Bra011583.1-P	Field mustard	plastid	59.42	62.92
VIT_18s0001g14840.t01	Wine grape	plastid	62.86	61.88
CDX69110	Canola	plastid	59.15	61.6
AT4G35080.3	Thale cress	plastid	61.54	59.64
CDY52650	Canola	plastid	59.68	59.37
Os06t0116400-01	Rice	mitochondrion, plastid	56.76	58.31
Zm00001d027721_P001	Maize	plastid	54.11	57.3
Os03t0156700-01	Rice	mitochondrion	53.32	56.46
GSMUA_Achr1P07500_001	Banana	plastid	51.99	55.84
EER92833	Sorghum	plastid	53.32	55.68
EER89091	Sorghum	mitochondrion	54.38	54.38
TraesCS4A01G033400.1	Wheat	mitochondrion	52.25	53.97
TraesCS4D01G271200.1	Wheat	plastid	52.25	53.68
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	51.72	53.57
CDX76312	Canola	cytosol	8.22	53.45
Bra034673.1-P	Field mustard	mitochondrion	12.73	53.33
TraesCS7D01G044600.1	Wheat	plastid	52.52	50.77
GSMUA_AchrUn_...	Banana	plastid	40.85	50.0
TraesCS4A01G435600.1	Wheat	plastid	51.46	50.0
TraesCS7A01G049500.1	Wheat	plastid	51.46	49.49
HORVU4Hr1G072520.2	Barley	plastid	50.4	41.94
CDY17508	Canola	extracellular	21.75	34.89

Protein Annotations

EnsemblPlants:Solyc01g111620.2.1	EnsemblPlantsGene:Solyc01g111620.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33876
PANTHER:PTHR33876:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002767711	UniProt:K4B424	MapMan:24.2.6.3

Description

No Description!

Coordinates

chr1:-:97839818..97843571

Molecular Weight (calculated)

39929.1 Da

IEP (calculated)

9.322

GRAVY (calculated)

0.444

Length

377 amino acids

Sequence
(BLAST)

001: MERLIYTNSP PSKLHLKTFP RLPKLHFSSL LHVEPRRPNS LSCKCIHQFS SSGSIASSRF GDGHAGNSSE SKHLQDGSGS KPHLLNWVAE ILSQQRKVVS
101: TSTVVLLSAM LVMLLHPVIV SPAFASFQTA AKTGGPAAAA VGTQLVRNEL LTSAWAGFFA GCLHTLSGPD HLAALAPLSI GRTPMESAAV GALWGCGHDA
201: GQLIFGLLFL LLKDRLHIEV IRTWGTRVVG FTLLVIGAMG IKEASEVATP CVALENGDCD VSVYEGIDTP VIGKKKKIGF ATFATGIVHG LQPDALMMIL
301: PALALPSRVA GAAFLGMFLV GTVIAMGSYT VFIGSCSQAL KDRVPRITEK LTWASSLIAI GLGIAIIVSQ FFGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.