CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011583.1-P	Field mustard	plastid	92.82	94.38
CDY17509	Canola	extracellular	20.17	90.12
CDY52650	Canola	plastid	93.92	89.71
AT4G35080.3	Thale cress	plastid	81.49	75.84
CDY47481	Canola	plastid	69.34	68.58
CDY26789	Canola	plastid	69.61	68.29
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.09	61.9
PGSC0003DMT400015782	Potato	plastid	61.88	60.05
Solyc01g111620.2.1	Tomato	plastid	61.6	59.15
CDX76312	Canola	cytosol	9.39	58.62
Solyc08g005980.2.1	Tomato	plastid	59.94	56.66
Os06t0116400-01	Rice	mitochondrion, plastid	56.63	55.86
EER92833	Sorghum	plastid	54.97	55.12
VIT_18s0001g14840.t01	Wine grape	plastid	58.29	55.09
PGSC0003DMT400038459	Potato	plastid	57.73	54.86
Zm00001d027721_P001	Maize	plastid	52.49	53.37
Os03t0156700-01	Rice	mitochondrion	51.93	52.81
GSMUA_Achr1P07500_001	Banana	plastid	50.55	52.14
TraesCS4A01G033400.1	Wheat	mitochondrion	50.83	50.41
EER89091	Sorghum	mitochondrion	52.21	50.13
TraesCS4D01G271200.1	Wheat	plastid	50.55	49.86
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.0	49.73
TraesCS7A01G049500.1	Wheat	plastid	52.21	48.21
TraesCS4A01G435600.1	Wheat	plastid	51.66	48.2
TraesCS7D01G044600.1	Wheat	plastid	51.66	47.95
GSMUA_AchrUn_...	Banana	plastid	38.95	45.78
CDY17508	Canola	extracellular	26.24	40.43
HORVU4Hr1G072520.2	Barley	plastid	49.45	39.51

Protein Annotations

EnsemblPlants:CDX69110	EnsemblPlantsGene:GSBRNA2T00130895001	GO:A0A078BWC9	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386
ProteinID:CDX69110	ProteinID:CDX69110.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBB2F2	MapMan:24.2.6.3

Description

BnaC01g03430D

Coordinates

chrLK031789:+:2981775..2983501

Molecular Weight (calculated)

38065.9 Da

IEP (calculated)

10.268

GRAVY (calculated)

0.426

Length

362 amino acids

Sequence
(BLAST)

001: MERLLQPPSS STISSPKFPS RASPFLPRLR SSTLGFLSSR RVSSVSCSSF WNQSACTPKR CNLAINSLNG PPSSRESKPN PGSLQRIVGA VSEKRKTLST
101: GTVILISAVA ALLLNPLLAP PAFASFQTAA KTGWLASAWT GFLAGCLHTL SGPDHLAALA PLSIGRTKME SAAVGALWGC GHDAGQVIFG LLFLLLKDRL
201: HIEVLQTWGT RIVGLTLVII GAMGIKEASE APEPCVALET DMSGIVPTEK EALSPPLPKK KKIGFATFAT GVVHGLQPDA LMIVLPALAL PSRIAGSAFL
301: IMFLVGTVVA MGSYTAFIGS CSEALKEKVP RITEKLTWVS SLVAIGLGLG IVISPFFGFS LY

Best Arabidopsis Sequence Match ( AT4G35080.1 )
(BLAST)

001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKTLSTGTVI LISAVAVLLL NPLLAPPAFA SFQTAAKSGW LTSAWTGFLA GCLHTLSGPD HLAALAPLSI GRSKMESAAV GALWGCGHDA GQVIFGLLFL
201: LLKDRLHIEV LQTWGTRIVG LTLVIIGAMG IKEASEIPEP CVALETDISM VSTEKEALPL PKKKKIGFAT FATGVVHGLQ PDALMIVLPA LALPSRLAGS
301: AFLIMFLVGT VIAMGSYTAF IGSCSEALKE KVPRITEKLT WVSSLVAIGL GLGIVISPFF GFSLY

Arabidopsis Description

High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.