Factsheet for Bra011583.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
peroxisome 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69110	Canola	plastid	94.38	92.82
CDY52650	Canola	plastid	97.47	91.56
AT4G35080.3	Thale cress	plastid	82.02	75.06
Bra037287.1-P	Field mustard	plastid	70.51	68.58
GSMUA_Achr3P00650_001	Banana	mitochondrion	44.38	62.7
PGSC0003DMT400015782	Potato	plastid	63.2	60.32
Bra034673.1-P	Field mustard	mitochondrion	15.17	60.0
Solyc01g111620.2.1	Tomato	plastid	62.92	59.42
Solyc08g005980.2.1	Tomato	plastid	60.11	55.87
Os06t0116400-01	Rice	mitochondrion, plastid	57.58	55.86
PGSC0003DMT400038459	Potato	plastid	58.71	54.86
VIT_18s0001g14840.t01	Wine grape	plastid	58.71	54.57
EER92833	Sorghum	plastid	55.06	54.29
Zm00001d027721_P001	Maize	plastid	53.37	53.37
Os03t0156700-01	Rice	mitochondrion	52.25	52.25
GSMUA_Achr1P07500_001	Banana	plastid	50.84	51.57
EER89091	Sorghum	mitochondrion	52.81	49.87
TraesCS4D01G271200.1	Wheat	plastid	51.4	49.86
TraesCS4A01G033400.1	Wheat	mitochondrion	51.12	49.86
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	50.84	49.73
TraesCS7A01G049500.1	Wheat	plastid	53.37	48.47
TraesCS7D01G044600.1	Wheat	plastid	53.09	48.46
TraesCS4A01G435600.1	Wheat	plastid	52.81	48.45
GSMUA_AchrUn_...	Banana	plastid	39.04	45.13
HORVU4Hr1G072520.2	Barley	plastid	48.88	38.41

Protein Annotations

EnsemblPlants:Bra011583.1	EnsemblPlants:Bra011583.1-P	EnsemblPlantsGene:Bra011583	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002547142
UniProt:M4D526	MapMan:24.2.6.3	:	:	:	:

Description

AT4G35080 (E=1e-132) | high-affinity nickel-transport family protein

Coordinates

chrA01:-:1560046..1561655

Molecular Weight (calculated)

37370.0 Da

IEP (calculated)

10.144

GRAVY (calculated)

0.444

Length

356 amino acids

Sequence
(BLAST)

001: MERLLQPPSS STISSPKFHS RASPFLSRLR SSSLGFVSSR RVSSVSCSSS FWNQSACTTK RCNLATNSVN GESKPNPGSL QRIVGAVSEK RKALSTGTVI
101: LISAVATLLL NPLLAPPAFA SFQTAAKTGW LASAWTGFLA GCLHTLSGPD HLAALAPLSI GRTKMESAAV GALWGCGHDA GQVIFGLLFL LLKDRLHIEV
201: LQTWGTRIVG LTLVIIGAMG IKEASEAPEP CVALETDMSG MVPAEKEALS PPKKKKIGFA TFATGVVHGL QPDALMIVLP ALALPSRLAG SAFLIMFLVG
301: TVVAMGSYTA FIGACSEALK EKVPRITEKL TWVSSLVAIG LGLGIVISPF FGFSLY

Best Arabidopsis Sequence Match ( AT4G35080.1 )
(BLAST)

001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKTLSTGTVI LISAVAVLLL NPLLAPPAFA SFQTAAKSGW LTSAWTGFLA GCLHTLSGPD HLAALAPLSI GRSKMESAAV GALWGCGHDA GQVIFGLLFL
201: LLKDRLHIEV LQTWGTRIVG LTLVIIGAMG IKEASEIPEP CVALETDISM VSTEKEALPL PKKKKIGFAT FATGVVHGLQ PDALMIVLPA LALPSRLAGS
301: AFLIMFLVGT VIAMGSYTAF IGSCSEALKE KVPRITEKLT WVSSLVAIGL GLGIVISPFF GFSLY

Arabidopsis Description

High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.