Factsheet for Bra037287.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	Bra039198.1-P	AT2G23420.1	21798944
AT2G16800.1	Bra003423.1-P	AT3G60600.1	21798944
AT2G16800.1	Bra007547.1-P	AT3G60600.1	21798944
AT2G16800.1	Bra014481.1-P	AT3G60600.1	21798944
AT2G16800.1	Bra002403.1-P	AT5G22290.1	21798944
AT2G16800.1	Bra006619.1-P	AT5G22290.1	21798944
AT2G16800.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47481	Canola	plastid	99.18	99.18
AT2G16800.1	Thale cress	plastid	80.05	78.76
Bra011583.1-P	Field mustard	plastid	68.58	70.51
PGSC0003DMT400015782	Potato	plastid	67.49	66.22
Solyc01g111620.2.1	Tomato	plastid	68.03	66.05
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.99	63.89
PGSC0003DMT400038459	Potato	plastid	63.39	60.89
Solyc08g005980.2.1	Tomato	plastid	63.39	60.57
VIT_18s0001g14840.t01	Wine grape	plastid	61.75	59.01
Bra034673.1-P	Field mustard	mitochondrion	14.21	57.78
Os06t0116400-01	Rice	mitochondrion, plastid	57.65	57.49
EER92833	Sorghum	plastid	55.74	56.51
GSMUA_Achr1P07500_001	Banana	plastid	54.1	56.41
Zm00001d027721_P001	Maize	plastid	54.1	55.62
Os03t0156700-01	Rice	mitochondrion	52.19	53.65
EER89091	Sorghum	mitochondrion	54.37	52.79
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	52.46	52.75
TraesCS4A01G033400.1	Wheat	mitochondrion	52.46	52.6
TraesCS4D01G271200.1	Wheat	plastid	52.73	52.59
TraesCS4A01G435600.1	Wheat	plastid	53.28	50.26
TraesCS7A01G049500.1	Wheat	plastid	53.28	49.74
TraesCS7D01G044600.1	Wheat	plastid	52.73	49.49
GSMUA_AchrUn_...	Banana	plastid	41.53	49.35
HORVU4Hr1G072520.2	Barley	plastid	50.82	41.06

Protein Annotations

EnsemblPlants:Bra037287.1	EnsemblPlants:Bra037287.1-P	EnsemblPlantsGene:Bra037287	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002541D94
UniProt:M4F876	MapMan:24.2.6.3	:	:	:	:

Description

AT2G16800 (E=2e-125) | high-affinity nickel-transport family protein

Coordinates

chrA09:+:4510582..4511804

Molecular Weight (calculated)

38728.8 Da

IEP (calculated)

10.306

GRAVY (calculated)

0.364

Length

366 amino acids

Sequence
(BLAST)

001: MDRLLQPPSS SILAPSKSHL RAPPLLLRVH RLDSPSLIPS SPRRVSSISC LFRHNPSPTA SNQARNLSSS SPKADESKPN PGLLERIVRS YEQRKTLSAG
101: TIILISAVVA LLLNPIVAPP ALASFQAAAK SSGAAVGGKL LRTEVLTSAW TGFFAGCLHT LSGPDHLAAL APLSIGRTRM ESAAVGALWG CGHDAGQLIF
201: GLLFLLLKDR LHIEVIRTWG TRVVGLTLLV IGAMGIKEAS EIPEPCVAAL ENGEETDEKS SKKKKKIGFA TFATGIVHGL QPDALMMVLP ALALPSRVAG
301: AAFLIMFLLG TVIAMGSYTV FIGSCSEALK EKVPRITEKL TWASSLVAIG LGLAIIVSQF FGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.