Factsheet for GSMUA_AchrUn_randomP16830_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P08220_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT2G16800.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT2G16800.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.18	52.78
GSMUA_Achr1P07500_001	Banana	plastid	52.92	46.44
VIT_03s0038g02470.t01	Wine grape	plastid	54.55	43.98
KRH39780	Soybean	plastid	46.75	43.64
Os03t0156700-01	Rice	mitochondrion	50.0	43.26
Os06t0116400-01	Rice	mitochondrion, plastid	50.97	42.78
CDY26789	Canola	plastid	50.32	42.01
Bra037287.1-P	Field mustard	plastid	49.35	41.53
CDY47481	Canola	plastid	49.35	41.53
PGSC0003DMT400015782	Potato	plastid	49.68	41.02
EER92833	Sorghum	plastid	48.05	41.0
KRH24328	Soybean	plastid	49.35	40.97
Solyc01g111620.2.1	Tomato	plastid	50.0	40.85
AT2G16800.1	Thale cress	plastid	49.03	40.59
KRH60695	Soybean	plastid	49.35	40.11
Zm00001d027721_P001	Maize	plastid	46.1	39.89
KRH51392	Soybean	plastid	47.73	39.62
Bra011583.1-P	Field mustard	plastid	45.13	39.04
CDX69110	Canola	plastid	45.78	38.95
VIT_18s0001g14840.t01	Wine grape	plastid	48.38	38.9
Solyc08g005980.2.1	Tomato	plastid	48.38	38.9
PGSC0003DMT400038459	Potato	plastid	48.05	38.85
EER89091	Sorghum	mitochondrion	46.75	38.2
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	45.13	38.19
TraesCS4D01G271200.1	Wheat	plastid	45.45	38.15
TraesCS4A01G033400.1	Wheat	mitochondrion	44.48	37.53
AT4G35080.3	Thale cress	plastid	47.08	37.28
CDY52650	Canola	plastid	45.78	37.2
TraesCS7D01G044600.1	Wheat	plastid	46.75	36.92
TraesCS4A01G435600.1	Wheat	plastid	45.78	36.34
TraesCS7A01G049500.1	Wheat	plastid	46.1	36.22
CDY17509	Canola	extracellular	9.42	35.8
CDY17508	Canola	extracellular	25.97	34.04
HORVU4Hr1G072520.2	Barley	plastid	44.81	30.46
CDX76312	Canola	cytosol	2.92	15.52
Bra034673.1-P	Field mustard	mitochondrion	4.22	14.44

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP16830_001	EnsemblPlants:GSMUA_AchrUn_randomT16830_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG16830_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029689A1	UniProt:M0U9U2
MapMan:24.2.6.3	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG16830_001]

Coordinates

chrchrUn_random:+:79201025..79204590

Molecular Weight (calculated)

33308.9 Da

IEP (calculated)

11.393

GRAVY (calculated)

0.238

Length

308 amino acids

Sequence
(BLAST)

001: MERLISSSSS SSSSSIPSRT AALPQIPRLR PLLRLRSPAD LKFGPWLTPR RDLKPPPVLV SKQKGPPLAV RWAQGEPRPA QLRDQFSGGR EGGGGTVLDV
101: VLLRKVARSA VIVLSAIVIA IIHPILAQPS FATVQSAAKP AGQLIRTELL TSAWTGFFAG CLHTLSGPDH LAALAPLSIG RSRIESAIVG ALWGCGHDAG
201: QVIFGLLFLT LKDRLHIEII RTWGTRVVGF TLLIIETDWI RNFCHRHCAR STARCTHDDL ASAGASITQA LKERVPRITE KLTWAASLVA ISMGLAILIS
301: QFFGFSLY

Best Arabidopsis Sequence Match ( AT4G35080.2 )
(BLAST)

001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKTLSTGTVI LISAVAVLLL NPLLAPPAFA SFQTAAKSGW LTSAWTGFLA GCLHTLSGPD HLAALAPLSI GRSKMESAAV GALWGCGHDA GQVIFGLLFL
201: LLKDRLHIEV LQTWGTRIVG LTLVIIGAMG IKEASEIPEP CVALETDISM VSTEKEALPL PKKKKIGFAT FATGVVHGLQ PDALMIVLPA LALPSREALK
301: EKVPRITEKL TWVSSLVAIG LGLGIVISPF FGFSLY

Arabidopsis Description

High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.