CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
golgi 1
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12559
EES14570
KXG26318
KXG31128
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	KXG26318	AT2G23420.1	21798944
AT2G16800.1	OQU90665	AT2G23420.1	21798944
AT2G16800.1	EES12559	AT3G60600.1	21798944
AT2G16800.1	EES14570	AT3G60600.1	21798944
AT2G16800.1	KXG31128	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17509	Canola	extracellular	15.38	71.6
Os06t0116400-01	Rice	mitochondrion, plastid	68.44	70.3
GSMUA_Achr3P00650_001	Banana	mitochondrion	45.36	67.86
KRH39780	Soybean	plastid	52.79	60.3
TraesCS7D01G044600.1	Wheat	plastid	61.01	58.97
TraesCS4A01G435600.1	Wheat	plastid	60.21	58.51
TraesCS7A01G049500.1	Wheat	plastid	58.89	56.63
KRH24328	Soybean	plastid	55.17	56.06
KRH51392	Soybean	plastid	54.11	54.99
PGSC0003DMT400015782	Potato	plastid	54.38	54.96
CDY47481	Canola	plastid	53.05	54.64
GSMUA_Achr1P07500_001	Banana	plastid	50.66	54.42
Solyc01g111620.2.1	Tomato	plastid	54.38	54.38
Bra037287.1-P	Field mustard	plastid	52.79	54.37
EER92833	Sorghum	plastid	51.99	54.29
VIT_03s0038g02470.t01	Wine grape	plastid	54.91	54.19
CDY26789	Canola	plastid	52.25	53.39
KRH60695	Soybean	plastid	53.58	53.3
VIT_18s0001g14840.t01	Wine grape	plastid	53.85	53.0
Bra011583.1-P	Field mustard	plastid	49.87	52.81
Solyc08g005980.2.1	Tomato	plastid	53.58	52.74
AT2G16800.1	Thale cress	plastid	51.99	52.69
PGSC0003DMT400038459	Potato	plastid	52.79	52.23
Bra034673.1-P	Field mustard	mitochondrion	12.47	52.22
CDX69110	Canola	plastid	50.13	52.21
CDX76312	Canola	cytosol	7.69	50.0
CDY52650	Canola	plastid	49.87	49.6
AT4G35080.3	Thale cress	plastid	50.66	49.1
GSMUA_AchrUn_...	Banana	plastid	38.2	46.75
CDY17508	Canola	extracellular	19.63	31.49

Protein Annotations

EnsemblPlants:EER89091	EnsemblPlantsGene:SORBI_3010G013700	EntrezGene:8066919	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	ProteinID:EER89091	ProteinID:EER89091.1	RefSeq:XP_002437724.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0001A899F9	UniProt:C5Z2V1	MapMan:24.2.6.3	:	:

Description

hypothetical protein

Coordinates

chr10:-:1142782..1144871

Molecular Weight (calculated)

38916.7 Da

IEP (calculated)

10.627

GRAVY (calculated)

0.468

Length

377 amino acids

Sequence
(BLAST)

001: MERLISSPPL LRRAPVAAAA AARPRAHRPL SILAHSVSIF RGGGGRLIRP PLASFLVARH RPTAAVPAGA APSAAKADGE EDGGASTTSR SFFQKVTCAA
101: AATLLSAIVL TLVVQPSWAP PALAHFHPTA KAAGTTTLFK SELLGSAWTG FLAGCLHTLS GPDHLAALAP LSIGRSRVES AAVGALWGCG HDAGQVLFGL
201: LFLGLRDRLH IEVIRTWSTR VVALTLLVIG ALGIREASEV PTPCVALDNA GHGHGHGHHH PAAATETTLP AAGGKTKINF ATFATGIVHG LQPDALMMIL
301: PALALPSRLA GAAFLGMFLV GTVVSMGSYT VFIGSCTEAL KDRVPRITEK LTWAASLLAI SMGLAILVSQ SFGITLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.