CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04597
KRH22653
KRH26664
KRH28456
KRH57934
KRH63322
KRH65384
KRH76164
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	KRH04597	AT2G23420.1	21798944
AT2G16800.1	KRH28456	AT2G23420.1	21798944
AT2G16800.1	KRH57934	AT2G23420.1	21798944
AT2G16800.1	KRH63322	AT2G23420.1	21798944
AT2G16800.1	KRH77015	AT2G23420.1	21798944
AT2G16800.1	KRH65384	AT3G60600.1	21798944
AT2G16800.1	KRH76164	AT3G60600.1	21798944
AT2G16800.1	KRH22653	AT5G22290.1	21798944
AT2G16800.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60695	Soybean	plastid	83.56	81.79
KRH39780	Soybean	plastid	67.12	75.45
KRH24328	Soybean	plastid	71.7	71.7
GSMUA_Achr3P00650_001	Banana	mitochondrion	44.74	65.87
PGSC0003DMT400015782	Potato	plastid	64.42	64.08
VIT_03s0038g02470.t01	Wine grape	plastid	65.77	63.87
Solyc01g111620.2.1	Tomato	plastid	64.42	63.4
AT2G16800.1	Thale cress	plastid	61.46	61.29
PGSC0003DMT400038459	Potato	plastid	61.46	59.84
Solyc08g005980.2.1	Tomato	plastid	61.46	59.53
Bra034673.1-P	Field mustard	mitochondrion	14.02	57.78
Os06t0116400-01	Rice	mitochondrion, plastid	56.33	56.95
CDX76312	Canola	cytosol	8.89	56.9
GSMUA_Achr1P07500_001	Banana	plastid	53.64	56.7
AT4G35080.3	Thale cress	plastid	57.95	55.27
Zm00001d027721_P001	Maize	plastid	52.29	54.49
EER89091	Sorghum	mitochondrion	54.99	54.11
EER92833	Sorghum	plastid	52.29	53.74
Os03t0156700-01	Rice	mitochondrion	51.21	53.37
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	49.33	50.27
TraesCS4D01G271200.1	Wheat	plastid	49.33	49.86
TraesCS4A01G033400.1	Wheat	mitochondrion	49.06	49.86
TraesCS7D01G044600.1	Wheat	plastid	51.75	49.23
TraesCS4A01G435600.1	Wheat	plastid	51.48	49.23
TraesCS7A01G049500.1	Wheat	plastid	51.21	48.47
GSMUA_AchrUn_...	Banana	plastid	39.62	47.73
HORVU4Hr1G072520.2	Barley	plastid	50.67	41.5

Protein Annotations

EMBL:ACUP02003371	EnsemblPlants:KRH51392	EnsemblPlantsGene:GLYMA_06G003400	EntrezGene:100812030	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:KRH51392	ProteinID:KRH51392.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023C514F	UniProt:I1K6Y6	MapMan:24.2.6.3	:

Description

hypothetical protein

Coordinates

chr6:+:291504..293527

Molecular Weight (calculated)

39478.5 Da

IEP (calculated)

9.828

GRAVY (calculated)

0.478

Length

371 amino acids

Sequence
(BLAST)

001: MDRLLSSPSP PSFTFLTRFE SATARFIFTR SHSHLKRVTS ICCQHANPSP FTPFLASSNH PNTFPSISSP SVRSTPESHS LNQIKTGAFQ KPKAITARTL
101: VILSALAMIL IQPAIAPAAF ATFQTAAKTG GPAAAVGRKL IHTELLSSAW TGFLAGCLHT LSGPDHLAAL APLSIGRTRM ESAAVGALWG CGHDAGQVLF
201: GLIFLILKDQ LHIEIIRTWG TRVVGLTLLI IGALGIKEAS EVHAPIVALE SDECNVNVYE SLDNPTVGKK KIGFATFATG IVHGLQPDAL MMVLPALALP
301: SRLAGAAFLI MFLIGTVIAM GSYTVFIGSC SQALKDRVPR ITEKLTWASS LIAIALGLAI IISQFFGFHL Y

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.