Factsheet for GSMUA_Achr1P07500_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P20280_001
GSMUA_Achr2P08220_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	GSMUA_Achr11P...	AT2G23420.1	21798944
AT2G16800.1	GSMUA_Achr2P08220_001	AT2G23420.1	21798944
AT2G16800.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT2G16800.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00650_001	Banana	mitochondrion	51.57	71.83
KRH39780	Soybean	plastid	55.27	58.79
VIT_03s0038g02470.t01	Wine grape	plastid	61.25	56.28
Os06t0116400-01	Rice	mitochondrion, plastid	57.83	55.31
KRH24328	Soybean	plastid	58.4	55.26
CDY47481	Canola	plastid	56.7	54.37
Bra037287.1-P	Field mustard	plastid	56.41	54.1
CDY26789	Canola	plastid	56.7	53.93
KRH51392	Soybean	plastid	56.7	53.64
KRH60695	Soybean	plastid	57.83	53.56
GSMUA_AchrUn_...	Banana	plastid	46.44	52.92
PGSC0003DMT400015782	Potato	plastid	56.13	52.81
AT2G16800.1	Thale cress	plastid	55.27	52.15
Solyc01g111620.2.1	Tomato	plastid	55.84	51.99
CDY17509	Canola	extracellular	11.97	51.85
CDX76312	Canola	cytosol	8.55	51.72
Zm00001d027721_P001	Maize	plastid	52.42	51.69
EER92833	Sorghum	plastid	52.99	51.52
Bra011583.1-P	Field mustard	plastid	51.57	50.84
EER89091	Sorghum	mitochondrion	54.42	50.66
Solyc08g005980.2.1	Tomato	plastid	55.27	50.65
CDX69110	Canola	plastid	52.14	50.55
Os03t0156700-01	Rice	mitochondrion	51.0	50.28
VIT_18s0001g14840.t01	Wine grape	plastid	54.7	50.13
PGSC0003DMT400038459	Potato	plastid	53.28	49.08
Bra034673.1-P	Field mustard	mitochondrion	12.54	48.89
CDY52650	Canola	plastid	52.42	48.55
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	49.57	47.8
TraesCS4D01G271200.1	Wheat	plastid	49.86	47.68
AT4G35080.3	Thale cress	plastid	52.71	47.56
TraesCS4A01G033400.1	Wheat	mitochondrion	49.0	47.12
TraesCS7A01G049500.1	Wheat	plastid	52.42	46.94
TraesCS4A01G435600.1	Wheat	plastid	51.57	46.65
TraesCS7D01G044600.1	Wheat	plastid	51.57	46.41
HORVU4Hr1G072520.2	Barley	plastid	49.86	38.63
CDY17508	Canola	extracellular	21.37	31.91

Protein Annotations

EnsemblPlants:GSMUA_Achr1P07500_001	EnsemblPlants:GSMUA_Achr1T07500_001	EnsemblPlantsGene:GSMUA_Achr1G07500_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295F816	UniProt:M0RXV8
MapMan:24.2.6.3	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G07500_001]

Coordinates

chr1:-:5831851..5834624

Molecular Weight (calculated)

37493.1 Da

IEP (calculated)

10.676

GRAVY (calculated)

0.257

Length

351 amino acids

Sequence
(BLAST)

001: MERLISSPCR TAPPFARPRP PVLLRRPPSY PKHSLPWLPR NGFKPVASLF SKRVGPPPPP PTPAVPSSSS SLSDASASRS AEEARKAQLY PERRASAGSI
101: LRKAVHSAVL VLASAIIFTI IQPILVPPSY ATVQSAARSG GRLIRTELLS SAWTGFLAGC LHTLSGPDHL AALAPLSIGR TRIESAVVGA LWGCGHDTGQ
201: VVFGLLFLML KDRMHIEVIR TWGTRVVGLT LLVIGAIGFR EASEVPTPCV ALENGECDVS IYEHLDAGPT GKKKFGFATF ATGIVHGLQP DALMMVLPAL
301: ALPSRLAGSF TQALKERVPR ITEKLTWAAS LVAISMGLAI LISQFFGFSL Y

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.