Factsheet for VIT_18s0001g14840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01
VIT_07s0031g00460.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944
AT2G16800.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT2G16800.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17509	Canola	extracellular	15.4	72.84
GSMUA_Achr3P00650_001	Banana	mitochondrion	42.04	63.89
VIT_03s0038g02470.t01	Wine grape	plastid	63.71	63.87
PGSC0003DMT400038459	Potato	plastid	63.45	63.78
PGSC0003DMT400015782	Potato	plastid	61.88	63.54
Solyc01g111620.2.1	Tomato	plastid	61.88	62.86
Solyc08g005980.2.1	Tomato	plastid	62.66	62.66
CDY47481	Canola	plastid	59.53	62.3
AT2G16800.1	Thale cress	plastid	60.31	62.1
Bra037287.1-P	Field mustard	plastid	59.01	61.75
CDY26789	Canola	plastid	59.01	61.25
Bra011583.1-P	Field mustard	plastid	54.57	58.71
CDX69110	Canola	plastid	55.09	58.29
Os06t0116400-01	Rice	mitochondrion, plastid	53.52	55.86
Zm00001d027721_P001	Maize	plastid	51.17	55.06
CDY52650	Canola	plastid	54.31	54.88
GSMUA_Achr1P07500_001	Banana	plastid	50.13	54.7
EER92833	Sorghum	plastid	51.44	54.57
AT4G35080.3	Thale cress	plastid	54.83	53.98
EER89091	Sorghum	mitochondrion	53.0	53.85
Os03t0156700-01	Rice	mitochondrion	49.35	53.09
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	48.56	51.1
TraesCS4A01G033400.1	Wheat	mitochondrion	48.56	50.96
TraesCS4D01G271200.1	Wheat	plastid	48.83	50.95
TraesCS4A01G435600.1	Wheat	plastid	50.91	50.26
TraesCS7D01G044600.1	Wheat	plastid	51.17	50.26
TraesCS7A01G049500.1	Wheat	plastid	50.91	49.74
GSMUA_AchrUn_...	Banana	plastid	38.9	48.38
HORVU4Hr1G072520.2	Barley	plastid	48.83	41.28
CDY17508	Canola	extracellular	20.1	32.77

Protein Annotations

EntrezGene:100255788	wikigene:100255788	MapMan:24.2.6.3	ProteinID:CCB46067	ProteinID:CCB46067.1	UniProt:F6GZT0
EMBL:FN595227	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100255788	wikigene:LOC100255788
PFAM:PF13386	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	TIGR:TC52193	TIGR:TC53145	TIGR:TC58297
TMHMM:TMhelix	UniParc:UPI00015C822C	ArrayExpress:VIT_18s0001g14840	EnsemblPlantsGene:VIT_18s0001g14840	EnsemblPlants:VIT_18s0001g14840.t01	unigene:Vvi.6879
RefSeq:XP_002270345	RefSeq:XP_002270345.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:12887405..12890179

Molecular Weight (calculated)

40709.8 Da

IEP (calculated)

9.991

GRAVY (calculated)

0.473

Length

383 amino acids

Sequence
(BLAST)

001: MERLIHSSSS LLSKPFLKPA HSPHRLSRND ALPFRLSFLK RPYFVQLGSA FCALENSSSS SSSSSFRRLK FHAHCSKKGP SFSSSPDPDV SSTPGSHFLK
101: RIVGAASNQQ KVITAGAVLL VSALFVLLVH PIITSSAYAT GFSAASAVNG KIVRTELLSS AWTGFFAGCL HTLSGPDHLA ALAPLSIGRT RVESALVGAL
201: WGCGHDAGQL IFGLLFLLLK DRLHIEILRT WGTRVVGFTL LVIGAMGIRE ASESPAPCVV LENGECDVSM YDSLEAPVVG KKKIGFATFA TGIVHGLQPD
301: ALMIILPALA LPSRIAGAAF LGMFLIGTVV AMGSYTVFIG SCSQALKERV PRVTEKLTWA SSLVAIALGL AIIFSQFFGF SLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.