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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G302400.1
TraesCS2A01G368500.1
TraesCS2B01G318300.2
TraesCS2B01G385700.2
TraesCS2D01G301100.1
TraesCS2D01G365300.2
TraesCS4A01G354500.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G16800.1 TraesCS2A01G302400.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS2B01G318300.2 AT2G23420.1 21798944
AT2G16800.1 TraesCS2D01G301100.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS4A01G354500.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS5B01G517900.3 AT2G23420.1 21798944
AT2G16800.1 TraesCS5D01G517600.1 AT2G23420.1 21798944
AT2G16800.1 TraesCS2A01G368500.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS2B01G385700.2 AT3G60600.1 21798944
AT2G16800.1 TraesCS2D01G365300.2 AT3G60600.1 21798944
AT2G16800.1 TraesCS6A01G237600.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS6B01G266100.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS6D01G220300.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS7A01G300700.1 AT3G60600.1 21798944
AT2G16800.1 TraesCS7D01G296400.1 AT3G60600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G271200.1 Wheat plastid 97.53 96.73
TraesCS4A01G033400.1 Wheat mitochondrion 95.6 95.34
Zm00001d027721_P001 Maize plastid 69.78 71.35
Os03t0156700-01 Rice mitochondrion 67.86 69.38
EER92833 Sorghum plastid 67.86 68.42
HORVU4Hr1G072520.2 Barley plastid 80.49 64.68
CDY17509 Canola extracellular 14.29 64.2
GSMUA_Achr3P00650_001 Banana mitochondrion 41.48 59.92
KRH39780 Soybean plastid 49.45 54.55
PGSC0003DMT400015782 Potato plastid 53.85 52.55
Bra037287.1-P Field mustard plastid 52.75 52.46
CDY47481 Canola plastid 52.75 52.46
CDY26789 Canola plastid 53.02 52.3
Bra034673.1-P Field mustard mitochondrion 12.91 52.22
Solyc01g111620.2.1 Tomato plastid 53.57 51.72
CDX76312 Canola cytosol 8.24 51.72
KRH24328 Soybean plastid 51.92 50.94
Solyc08g005980.2.1 Tomato plastid 53.57 50.91
Bra011583.1-P Field mustard plastid 49.73 50.84
PGSC0003DMT400038459 Potato plastid 52.75 50.39
VIT_03s0038g02470.t01 Wine grape plastid 52.47 50.0
CDX69110 Canola plastid 49.73 50.0
AT2G16800.1 Thale cress plastid 51.1 50.0
GSMUA_Achr1P07500_001 Banana plastid 47.8 49.57
KRH51392 Soybean plastid 50.27 49.33
KRH60695 Soybean plastid 51.1 49.08
VIT_18s0001g14840.t01 Wine grape plastid 51.1 48.56
CDY52650 Canola plastid 50.0 48.02
AT4G35080.3 Thale cress plastid 49.18 46.02
GSMUA_AchrUn_... Banana plastid 38.19 45.13
CDY17508 Canola extracellular 19.78 30.64
Protein Annotations
EnsemblPlants:TraesCS4B01G272000.1EnsemblPlantsGene:TraesCS4B01G272000PANTHER:PTHR33876PANTHER:PTHR33876:SF2PFAM:PF13386SEG:seg
TMHMM:TMhelixMapMan:24.2.6.3::::
Description
No Description!
Coordinates
chr4B:-:548195145..548197985
Molecular Weight (calculated)
37816.7 Da
IEP (calculated)
9.805
GRAVY (calculated)
0.504
Length
364 amino acids
Sequence
(BLAST)
001: MERLISRTAV SPAQPRIHLP GRSPFLTTRR AAPASAGAGS AAPWTRLCAQ PPRLGAAVAA AVRHDGASAP VPVEEVAPAA AGPPWKLLGN LLPKASTAAL
101: VLLMTLTASA LHSSIPHPAY ASLQPVIKSG GLLSTELLSS GWAGFFAGCL HTLSGPDHLV ALAPLSIGRS RLESGLVGAL WGCGHDAGQI IFGLLFLLLK
201: DRLHIEVLRI WGTRVVGLTL LMIGATGIRE ASEVQESGLI LEGVDMSGSE PLQQAPAVAP RKKKVGFTTF ATGVVHGLQP DALLMVLPAL ALPSRFAGAA
301: YLGMFLVGTV FSMGSYTAFV GSCSEALKDR IPKITEKLTW AASLVAVCMG LALLVGQFFG FTLY
Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)
001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.