Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 4
- plasma membrane 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16800.1 | GSMUA_Achr11P... | AT2G23420.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr2P08220_001 | AT2G23420.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr11P... | AT3G60600.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr1P20280_001 | AT3G60600.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr5P20880_001 | AT3G60600.1 | 21798944 |
| AT2G16800.1 | GSMUA_Achr8P11120_001 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76312 | Canola | cytosol | 11.9 | 51.72 |
| GSMUA_Achr1P07500_001 | Banana | plastid | 71.83 | 51.57 |
| KRH39780 | Soybean | plastid | 65.08 | 49.7 |
| Bra034673.1-P | Field mustard | mitochondrion | 16.67 | 46.67 |
| Os06t0116400-01 | Rice | mitochondrion, plastid | 66.67 | 45.78 |
| CDY17509 | Canola | extracellular | 14.68 | 45.68 |
| EER89091 | Sorghum | mitochondrion | 67.86 | 45.36 |
| VIT_03s0038g02470.t01 | Wine grape | plastid | 68.65 | 45.29 |
| KRH51392 | Soybean | plastid | 65.87 | 44.74 |
| KRH24328 | Soybean | plastid | 65.48 | 44.47 |
| Bra011583.1-P | Field mustard | plastid | 62.7 | 44.38 |
| CDY47481 | Canola | plastid | 64.29 | 44.26 |
| Bra037287.1-P | Field mustard | plastid | 63.89 | 43.99 |
| AT2G16800.1 | Thale cress | plastid | 64.68 | 43.82 |
| CDY26789 | Canola | plastid | 63.89 | 43.63 |
| PGSC0003DMT400015782 | Potato | plastid | 64.29 | 43.43 |
| KRH60695 | Soybean | plastid | 65.08 | 43.27 |
| Zm00001d027721_P001 | Maize | plastid | 61.11 | 43.26 |
| EER92833 | Sorghum | plastid | 61.9 | 43.21 |
| GSMUA_AchrUn_... | Banana | plastid | 52.78 | 43.18 |
| CDX69110 | Canola | plastid | 61.9 | 43.09 |
| Solyc01g111620.2.1 | Tomato | plastid | 64.29 | 42.97 |
| Os03t0156700-01 | Rice | mitochondrion | 59.92 | 42.42 |
| VIT_18s0001g14840.t01 | Wine grape | plastid | 63.89 | 42.04 |
| PGSC0003DMT400038459 | Potato | plastid | 63.49 | 41.99 |
| Solyc08g005980.2.1 | Tomato | plastid | 63.49 | 41.78 |
| TraesCS4B01G272000.1 | Wheat | mitochondrion, plastid | 59.92 | 41.48 |
| CDY52650 | Canola | plastid | 62.3 | 41.42 |
| TraesCS4D01G271200.1 | Wheat | plastid | 60.32 | 41.42 |
| TraesCS4A01G435600.1 | Wheat | plastid | 62.7 | 40.72 |
| TraesCS4A01G033400.1 | Wheat | mitochondrion | 58.73 | 40.55 |
| TraesCS7D01G044600.1 | Wheat | plastid | 62.3 | 40.26 |
| AT4G35080.3 | Thale cress | plastid | 61.9 | 40.1 |
| TraesCS7A01G049500.1 | Wheat | plastid | 61.51 | 39.54 |
| HORVU4Hr1G072520.2 | Barley | plastid | 60.32 | 33.55 |
| CDY17508 | Canola | extracellular | 26.19 | 28.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P00650_001 | EnsemblPlants:GSMUA_Achr3T00650_001 | EnsemblPlantsGene:GSMUA_Achr3G00650_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR33876 | PANTHER:PTHR33876:SF2 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000294BA93 | UniProt:M0SAN3 |
| MapMan:24.2.6.3 | : | : | : | : | : |
Description
high-affinity nickel-transport family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G00650_001]
Coordinates
chr3:-:508823..509773
Molecular Weight (calculated)
26577.0 Da
IEP (calculated)
10.264
GRAVY (calculated)
0.622
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MYAYAPSTKK RRITLHVEVA RAAVVTALSA ITLTVTNSIL AQPSFARVQS ASNLGGQLIK TELLSSALAG FLAGCLHTLS GPDHLAALAP LSIGRTKMES
101: AIVGALWGCG HDAGQVLFGL LFLMLRDRLH IEVFRTWGTR VVGLTLLVIG ALGIREASEV PASCVALDEP SDLSSTGKRK IGLATFATGI VHGLQPDALM
201: IILPALALPS RLAALKERAP RITEKLTWAA SLIAISMGLA LLITPFFGFS LF
101: AIVGALWGCG HDAGQVLFGL LFLMLRDRLH IEVFRTWGTR VVGLTLLVIG ALGIREASEV PASCVALDEP SDLSSTGKRK IGLATFATGI VHGLQPDALM
201: IILPALALPS RLAALKERAP RITEKLTWAA SLIAISMGLA LLITPFFGFS LF
001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.