Factsheet for Zm00001d027721_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003674_P001
Zm00001d003675_P001
Zm00001d017390_P001
Zm00001d025412_P001
Zm00001d025939_P003
Zm00001d034777_P005
Zm00001d036342_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16800.1	Zm00001d003674_P001	AT2G23420.1	21798944
AT2G16800.1	Zm00001d003675_P001	AT2G23420.1	21798944
AT2G16800.1	Zm00001d025412_P001	AT2G23420.1	21798944
AT2G16800.1	Zm00001d034777_P005	AT2G23420.1	21798944
AT2G16800.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT2G16800.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT2G16800.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT2G16800.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT2G16800.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92833	Sorghum	plastid	80.62	79.5
Os03t0156700-01	Rice	mitochondrion	72.75	72.75
TraesCS4B01G272000.1	Wheat	mitochondrion, plastid	71.35	69.78
CDY17509	Canola	extracellular	15.73	69.14
TraesCS4D01G271200.1	Wheat	plastid	71.07	68.94
TraesCS4A01G033400.1	Wheat	mitochondrion	70.51	68.77
GSMUA_Achr3P00650_001	Banana	mitochondrion	43.26	61.11
KRH39780	Soybean	plastid	53.65	57.88
PGSC0003DMT400015782	Potato	plastid	56.74	54.16
Solyc01g111620.2.1	Tomato	plastid	57.3	54.11
CDY47481	Canola	plastid	55.62	54.1
Bra037287.1-P	Field mustard	plastid	55.62	54.1
VIT_03s0038g02470.t01	Wine grape	plastid	57.58	53.66
HORVU4Hr1G072520.2	Barley	plastid	68.26	53.64
KRH24328	Soybean	plastid	55.9	53.64
CDY26789	Canola	plastid	55.34	53.39
Bra011583.1-P	Field mustard	plastid	53.37	53.37
Bra034673.1-P	Field mustard	mitochondrion	13.48	53.33
CDX69110	Canola	plastid	53.37	52.49
GSMUA_Achr1P07500_001	Banana	plastid	51.69	52.42
KRH51392	Soybean	plastid	54.49	52.29
Solyc08g005980.2.1	Tomato	plastid	55.9	51.96
CDX76312	Canola	cytosol	8.43	51.72
PGSC0003DMT400038459	Potato	plastid	55.34	51.71
AT2G16800.1	Thale cress	plastid	53.93	51.61
KRH60695	Soybean	plastid	54.49	51.19
VIT_18s0001g14840.t01	Wine grape	plastid	55.06	51.17
CDY52650	Canola	plastid	53.93	50.66
AT4G35080.3	Thale cress	plastid	53.93	49.36
GSMUA_AchrUn_...	Banana	plastid	39.89	46.1
CDY17508	Canola	extracellular	20.22	30.64

Protein Annotations

EMBL:BT068378	EnsemblPlants:Zm00001d027721_P001	EnsemblPlants:Zm00001d027721_T001	EnsemblPlantsGene:Zm00001d027721	EntrezGene:100193940	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33876	PANTHER:PTHR33876:SF2	PFAM:PF13386	ProteinID:ONL93755.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI000195CD87	UniProt:C0PJA9	MapMan:24.2.6.3	:

Description

high-affinity nickel-transport family protein

Coordinates

chr1:-:12140948..12146615

Molecular Weight (calculated)

37119.7 Da

IEP (calculated)

9.352

GRAVY (calculated)

0.474

Length

356 amino acids

Sequence
(BLAST)

001: MERLISTPAA SPTQTRIRGP LSLPSRLPAA AAWPRLRCRP GAIALASPLR HEALSAAPEE ARSQPPPPAA VGSPWELLGS LLPKACTAAL FLLMTVVTSS
101: LHSSLPAYAS MQPVAKTGGG GGLFTTEILS SGWAGFLAGC LHTLSGPDHL VALAPLSIGR SRLESGLVGA LWGCGHDAGQ VIFGLLFLLL KDRLHIEVFR
201: AWGTRVVGLT LLIIGAMGVR EASEVQESSL VLEGVDTSSM SSNEPLQPAS APRKKKVGFA TFATGIVHGL QPDALLMVLP ALALPSRFAG AAFLGMFLVG
301: TVFSMGSYTA FVGSCSEALK EKVPRITEKL TWAASLVAIA MGVALLVGQF FGFSLY

Best Arabidopsis Sequence Match ( AT2G16800.1 )
(BLAST)

001: MDRLLQPPSS HSIAPSKFQS RPSPLLLHRL HSTNLSTFPS SRRLESRRIS SISCFFRQNP SPDTSPGLNQ SSNFLIASSQ TDASKPNPGF IQRIVSSFEQ
101: RKTISAGMVI LVSAIAALLL NPILVPPAFA SFQTATNSGG AAVVGGKLLR TEVLTSAWTG FFAGCLHTLS GPDHLAALAP LSIGRTRMES AAVGALWGCG
201: HDAGQLIFGL LFLLLKDRLH IEVIRTWGTR VVGLTLLVIG AMGIKEASEM PEPCVVTLEN GETDEKSLKK KKIGFATFAT GIVHGLQPDA LMMVLPALAL
301: PSRIAGASFL IMFLIGTVIA MGSYTVFIGS CSEALKEKVP RITEKLTWAS SLVAIGLGLA IIVSQFFGFS LY

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SLD9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.