Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17509 | Canola | extracellular | 18.77 | 90.12 |
| Bra011583.1-P | Field mustard | plastid | 75.06 | 82.02 |
| CDX69110 | Canola | plastid | 75.84 | 81.49 |
| CDY52650 | Canola | plastid | 76.09 | 78.1 |
| AT2G16800.1 | Thale cress | plastid | 63.75 | 66.67 |
| PGSC0003DMT400015782 | Potato | plastid | 59.64 | 62.2 |
| GSMUA_Achr3P00650_001 | Banana | mitochondrion | 40.1 | 61.9 |
| Solyc01g111620.2.1 | Tomato | plastid | 59.64 | 61.54 |
| KRH39780 | Soybean | plastid | 51.67 | 60.91 |
| KRH60695 | Soybean | plastid | 57.33 | 58.84 |
| Solyc08g005980.2.1 | Tomato | plastid | 57.07 | 57.96 |
| KRH51392 | Soybean | plastid | 55.27 | 57.95 |
| KRH24328 | Soybean | plastid | 54.76 | 57.41 |
| PGSC0003DMT400038459 | Potato | plastid | 55.27 | 56.43 |
| EER92833 | Sorghum | plastid | 50.9 | 54.85 |
| VIT_18s0001g14840.t01 | Wine grape | plastid | 53.98 | 54.83 |
| Os06t0116400-01 | Rice | mitochondrion, plastid | 51.67 | 54.77 |
| Os03t0156700-01 | Rice | mitochondrion | 49.87 | 54.49 |
| Zm00001d027721_P001 | Maize | plastid | 49.36 | 53.93 |
| GSMUA_Achr1P07500_001 | Banana | plastid | 47.56 | 52.71 |
| EER89091 | Sorghum | mitochondrion | 49.1 | 50.66 |
| TraesCS4A01G033400.1 | Wheat | mitochondrion | 46.79 | 49.86 |
| TraesCS4B01G272000.1 | Wheat | mitochondrion, plastid | 46.02 | 49.18 |
| TraesCS4D01G271200.1 | Wheat | plastid | 46.27 | 49.05 |
| TraesCS4A01G435600.1 | Wheat | plastid | 48.59 | 48.71 |
| TraesCS7D01G044600.1 | Wheat | plastid | 48.07 | 47.95 |
| TraesCS7A01G049500.1 | Wheat | plastid | 48.07 | 47.7 |
| GSMUA_AchrUn_... | Banana | plastid | 37.28 | 47.08 |
| CDY17508 | Canola | extracellular | 25.19 | 41.7 |
| HORVU4Hr1G072520.2 | Barley | plastid | 47.3 | 40.62 |
Protein Annotations
| ArrayExpress:AT4G35080 | EnsemblPlants:AT4G35080.3 | EnsemblPlantsGene:AT4G35080 | EntrezGene:829660 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR33876 | PANTHER:PTHR33876:SF2 | PFAM:PF13386 | PO:PO:0000293 | ProteinID:AEE86461.1 |
| RefSeq:AT4G35080 | RefSeq:AT4G35080-TAIR-G | RefSeq:NP_001190919.1 | SEG:seg | TAIR:AT4G35080 | TAIR:AT4G35080.3 |
| TMHMM:TMhelix | Unigene:At.24363 | UniParc:UPI0001E9300D | UniProt:F4JM82 | MapMan:24.2.6.3 | : |
Description
High-affinity nickel-transport family protein [Source:UniProtKB/TrEMBL;Acc:F4JM82]
Coordinates
chr4:+:16698334..16700321
Molecular Weight (calculated)
41432.7 Da
IEP (calculated)
10.022
GRAVY (calculated)
0.305
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MERLLQPSSS SSSISPSKFP SRTSPFLPRL RSSGLSFVST HRPESRRVSS ISCNSSQIPS LYTPIGSNTT NNSFNGSPKS DESKPNPGFL TRIATSASEQ
101: RKETYEKFVY SLLEKKIPRI TKSSNFTLST GTVILISAVA VLLLNPLLAP PAFASFQTAA KSGWLTSAWT GFLAGCLHTL SGPDHLAALA PLSIGRSKME
201: SAAVGALWGC GHDAGQVIFG LLFLLLKDRL HIEVLQTWGT RIVGLTLVII GAMGIKEASE IPEPCVALET DISMVSTEKE ALPLPKKKKI GFATFATGVV
301: HGLQPDALMI VLPALALPSR LAGSAFLIMF LVGTVIAMGS YTAFIGSCSE ALKEKVPRIT EKLTWVSSLV AIGLGLGIVI SPFFGFSLY
101: RKETYEKFVY SLLEKKIPRI TKSSNFTLST GTVILISAVA VLLLNPLLAP PAFASFQTAA KSGWLTSAWT GFLAGCLHTL SGPDHLAALA PLSIGRSKME
201: SAAVGALWGC GHDAGQVIFG LLFLLLKDRL HIEVLQTWGT RIVGLTLVII GAMGIKEASE IPEPCVALET DISMVSTEKE ALPLPKKKKI GFATFATGVV
301: HGLQPDALMI VLPALALPSR LAGSAFLIMF LVGTVIAMGS YTAFIGSCSE ALKEKVPRIT EKLTWVSSLV AIGLGLGIVI SPFFGFSLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.