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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, golgi, plasma membrane

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • golgi 4
  • extracellular 4
  • plasma membrane 4
  • endoplasmic reticulum 3
  • vacuole 3
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, golgi, plasma membrane
Any Predictor:mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:golgi
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d003751_P001 Maize extracellular, golgi, plasma membrane 93.21 91.56
Zm00001d025371_P001 Maize extracellular, golgi, plasma membrane 89.59 88.39
HORVU2Hr1G073830.1 Barley extracellular, plasma membrane 82.81 84.72
Os04t0416700-01 Rice golgi, plasma membrane 84.16 84.55
TraesCS2D01G295700.1 Wheat extracellular, plasma membrane 82.35 84.26
TraesCS2B01G313900.1 Wheat extracellular, plasma membrane 82.35 84.26
TraesCS2A01G297700.1 Wheat extracellular, plasma membrane 80.09 81.94
EES06921 Sorghum endoplasmic reticulum 61.54 64.15
EES16682 Sorghum golgi, plasma membrane, plastid 51.58 53.27
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 22.17 51.04
EES08013 Sorghum golgi, plasma membrane, plastid 47.06 48.6
Bra002396.1-P Field mustard plasma membrane 41.63 44.44
GSMUA_Achr9P08960_001 Banana plasma membrane 42.08 44.29
VIT_06s0080g01200.t01 Wine grape plasma membrane 41.63 44.23
CDX92375 Canola plasma membrane 41.18 43.96
CDX98590 Canola plasma membrane 40.72 43.48
PGSC0003DMT400015090 Potato plasma membrane 40.27 42.79
Solyc11g068890.1.1 Tomato plasma membrane 40.27 42.58
AT5G22200.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 40.27 42.38
EES13132 Sorghum cytosol 41.63 42.01
Solyc06g074040.1.1 Tomato plasma membrane 39.37 41.83
PGSC0003DMT400050538 Potato plasma membrane 39.37 41.63
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 39.82 41.31
CDY29084 Canola mitochondrion 32.13 41.28
KRH26671 Soybean plasma membrane 41.18 41.18
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 39.82 41.12
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 38.46 41.06
CDY69513 Canola plasma membrane 38.01 40.78
Bra035001.1-P Field mustard plasma membrane 38.01 40.78
CDY08687 Canola plasma membrane 38.01 40.78
AT3G44220.1 Thale cress plasma membrane 38.01 40.78
KRG96252 Soybean plasma membrane 38.46 40.48
CDY35671 Canola plasma membrane 38.01 40.19
CDY09123 Canola plasma membrane 37.56 39.71
KRH32836 Soybean plasma membrane 37.56 39.71
AT5G06330.1 Thale cress plasma membrane 37.1 39.61
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 38.01 39.25
Bra020177.1-P Field mustard plasma membrane 37.1 39.23
AT3G11660.1 Thale cress plasma membrane 36.65 38.76
KRH22643 Soybean plasma membrane 38.01 38.53
CDX90600 Canola plasma membrane 35.75 37.98
Bra038671.1-P Field mustard plasma membrane 36.2 37.91
KRH72197 Soybean plasma membrane 35.29 37.68
Bra012801.1-P Field mustard plasma membrane 35.29 37.5
CDY72430 Canola cytosol 35.29 37.5
Bra006927.1-P Field mustard cytosol 35.29 37.5
CDY32068 Canola plasma membrane 34.84 37.38
AT3G52470.1 Thale cress extracellular, plasma membrane 34.84 37.02
Bra033428.1-P Field mustard cytosol 34.84 37.02
CDY69198 Canola cytosol 34.84 37.02
CDY68967 Canola cytosol 34.84 37.02
PGSC0003DMT400072342 Potato extracellular, plasma membrane 35.29 36.97
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 35.29 36.97
CDY40419 Canola plasma membrane 34.39 36.54
Bra017276.1-P Field mustard plasma membrane 34.39 36.54
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 34.84 36.32
CDY01043 Canola mitochondrion 34.84 36.32
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 34.84 36.32
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 33.94 35.71
PGSC0003DMT400042351 Potato extracellular, plasma membrane 33.94 35.55
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 33.94 35.55
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 33.03 34.6
KRH67997 Soybean plastid 38.91 34.13
CDX81001 Canola plastid 33.03 33.95
Bra005892.1-P Field mustard plasma membrane 32.58 33.8
AT5G05657.1 Thale cress plastid 20.81 33.58
CDY55755 Canola plasma membrane 31.67 32.86
EER99240 Sorghum golgi 29.41 29.68
CDX95339 Canola plasma membrane 34.84 25.84
OQU84133 Sorghum endoplasmic reticulum, golgi, nucleus 21.27 20.26
OQU77870 Sorghum plastid 25.79 17.87
Protein Annotations
MapMan:35.1EntrezGene:8073007UniProt:C5YGA6EnsemblPlants:EES12138ProteinID:EES12138ProteinID:EES12138.1
GO:GO:0003674GO:GO:0004871GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009506GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0046658InterPro:LEA_2PFAM:PF03168PANTHER:PTHR31415
PANTHER:PTHR31415:SF12EnsemblPlantsGene:SORBI_3006G075000unigene:Sbi.14232TMHMM:TMhelixUniParc:UPI0001A87093RefSeq:XP_002447810.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr6:-:43781229..43782534
Molecular Weight (calculated)
23728.7 Da
IEP (calculated)
7.910
GRAVY (calculated)
0.306
Length
221 amino acids
Sequence
(BLAST)
001: MSKEKHHRDW VLRRCCGSIA ACILTLFALV GFIVLVIYLA LHPSKPSFYL QDVQLRSIDL SDPALSLDLQ VTIASRNPND RVGVYYKTLD AFTTYRDEPV
101: TVPVSMPSIY QGHKDVSVWS PVMSGDAVPV AQYVADAMKQ DIAAGYVLLH VKVEGRVKWK VGSWVSGGYH LFVTCPALLA TSGSAVAGGA FAASAASGVP
201: AGVNTTVSLK FTHPADCTVD V
Best Arabidopsis Sequence Match ( AT3G44220.1 )
(BLAST)
001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV
Arabidopsis Description
At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.