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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G44220.1 Thale cress plasma membrane 72.86 74.27
Bra002396.1-P Field mustard plasma membrane 71.9 72.95
CDX92375 Canola plasma membrane 71.43 72.46
CDX98590 Canola plasma membrane 70.48 71.5
CDY09123 Canola plasma membrane 68.57 68.9
CDY35671 Canola plasma membrane 67.62 67.94
Bra020177.1-P Field mustard plasma membrane 67.14 67.46
VIT_06s0080g01200.t01 Wine grape plasma membrane 54.29 54.81
Solyc06g074040.1.1 Tomato plasma membrane 52.86 53.37
PGSC0003DMT400015090 Potato plasma membrane 52.86 53.37
AT3G52470.1 Thale cress extracellular, plasma membrane 50.0 50.48
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 22.38 48.96
Solyc11g068890.1.1 Tomato plasma membrane 48.57 48.8
PGSC0003DMT400050538 Potato plasma membrane 48.1 48.33
AT5G06330.1 Thale cress plasma membrane 47.62 48.31
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 47.62 47.62
GSMUA_Achr9P29670_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 39.52 47.16
TraesCS5B01G125000.1 Wheat cytosol, extracellular, plasma membrane 39.05 46.86
GSMUA_Achr9P08960_001 Banana plasma membrane 46.67 46.67
AT3G11660.1 Thale cress plasma membrane 46.19 46.41
Zm00001d016733_P001 Maize extracellular, plasma membrane 41.43 46.28
GSMUA_Achr10P... Banana plasma membrane 46.19 45.97
TraesCS5A01G125800.1 Wheat golgi, plasma membrane, plastid 45.24 45.67
Os11t0157200-03 Rice plasma membrane 45.24 45.24
TraesCS5D01G133400.1 Wheat golgi, plasma membrane, plastid 44.76 45.19
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 45.24 45.02
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 44.76 44.55
KRH22643 Soybean plasma membrane 46.19 44.5
EES16682 Sorghum golgi, plasma membrane, plastid 45.24 44.39
GSMUA_Achr7P03290_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.76 44.13
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 44.76 44.13
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 44.76 44.13
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.76 44.13
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.76 43.93
TraesCS5D01G133300.1 Wheat cytosol 43.33 43.75
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 44.29 43.66
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 44.29 43.66
KRH26671 Soybean plasma membrane 45.71 43.44
Zm00001d052776_P001 Maize extracellular 43.81 43.19
GSMUA_Achr6P19500_001 Banana endoplasmic reticulum, plasma membrane 43.33 43.13
HORVU7Hr1G078320.1 Barley cytosol 44.29 43.06
TraesCS7A01G327200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 44.29 43.06
TraesCS7D01G323900.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 44.29 43.06
GSMUA_Achr11P... Banana cytosol, extracellular, mitochondrion, peroxisome 36.67 43.02
Zm00001d034977_P001 Maize cytosol, mitochondrion, peroxisome, plasma membrane 43.81 42.99
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 43.81 42.99
TraesCS5B01G124900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 42.38 42.79
TraesCS7B01G227800.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 43.81 42.59
Os12t0159600-01 Rice plastid 42.86 42.45
EES06921 Sorghum endoplasmic reticulum 42.86 42.45
GSMUA_Achr8P34450_001 Banana plasma membrane 41.9 42.11
Zm00001d026664_P001 Maize extracellular 44.29 42.08
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 42.86 42.06
Zm00001d041927_P001 Maize endoplasmic reticulum, golgi, plasma membrane 42.38 41.98
TraesCS2D01G210700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 42.86 41.86
TraesCS2A01G205300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 42.86 41.86
TraesCS2B01G232700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 42.86 41.86
Zm00001d023468_P001 Maize extracellular 42.38 41.78
EES13132 Sorghum cytosol 43.33 41.55
Os04t0685400-01 Rice golgi, plasma membrane, plastid 43.33 41.36
HORVU5Hr1G114220.1 Barley endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 41.9 40.74
TraesCS2D01G295700.1 Wheat extracellular, plasma membrane 41.9 40.74
HORVU2Hr1G073830.1 Barley extracellular, plasma membrane 41.9 40.74
TraesCS2B01G313900.1 Wheat extracellular, plasma membrane 41.9 40.74
TraesCS2A01G297700.1 Wheat extracellular, plasma membrane 41.9 40.74
TraesCS5D01G498400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 41.43 40.65
TraesCS5B01G498200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 41.43 40.65
TraesCS5A01G484900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 41.43 40.65
EES12138 Sorghum extracellular, golgi, plasma membrane 42.38 40.27
TraesCS2B01G603000.1 Wheat cytosol, golgi, plasma membrane 42.38 40.27
AT5G05657.1 Thale cress plastid 26.19 40.15
TraesCS2A01G583600.1 Wheat cytosol, golgi, plasma membrane 41.9 39.82
Zm00001d003751_P001 Maize extracellular, golgi, plasma membrane 42.38 39.56
Os04t0416700-01 Rice golgi, plasma membrane 41.43 39.55
TraesCS2D01G596200.1 Wheat cytosol, golgi, plasma membrane 41.43 39.37
EES08013 Sorghum golgi, plasma membrane, plastid 40.0 39.25
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 41.43 38.84
HORVU2Hr1G040910.1 Barley peroxisome 43.81 38.66
HORVU2Hr1G123370.1 Barley cytosol, golgi, plasma membrane 40.48 38.64
TraesCS5A01G125600.1 Wheat cytosol, peroxisome, plasma membrane 40.48 38.12
Zm00001d025371_P001 Maize extracellular, golgi, plasma membrane 40.48 37.95
Os08t0102700-01 Rice cytosol, peroxisome, plasma membrane 40.0 37.0
HORVU5Hr1G040160.3 Barley golgi, peroxisome 45.71 35.16
AT5G53730.1 Thale cress plastid 31.9 31.46
HORVU2Hr1G066420.1 Barley mitochondrion, plastid 24.29 25.63
AT4G01410.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane 27.62 25.55
Protein Annotations
MapMan:35.1EntrezGene:832281ProteinID:AED92995.1ArrayExpress:AT5G22200EnsemblPlantsGene:AT5G22200RefSeq:AT5G22200
TAIR:AT5G22200RefSeq:AT5G22200-TAIR-GEnsemblPlants:AT5G22200.1TAIR:AT5G22200.1ProteinID:CAC34513.1GO:GO:0003674
GO:GO:0004871GO:GO:0005575GO:GO:0005618GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009505GO:GO:0009506
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0030312GO:GO:0046658InterPro:LEA_2
RefSeq:NP_680206.1PFAM:PF03168PANTHER:PTHR31415PANTHER:PTHR31415:SF17UniProt:Q9C568TMHMM:TMhelix
UniParc:UPI000009EEA4SEG:seg::::
Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9C568]
Coordinates
chr5:+:7355570..7357122
Molecular Weight (calculated)
23736.9 Da
IEP (calculated)
9.134
GRAVY (calculated)
0.190
Length
210 amino acids
Sequence
(BLAST)
001: MTGRYCDQHN GYEERRMRMM MRRIAWACLG LIVAVAFVVF LVWAILHPHG PRFVLQDVTI NDFNVSQPNF LSSNLQVTVS SRNPNDKIGI FYDRLDIYVT
101: YRNQEVTLAR LLPSTYQGHL EVTVWSPFLI GSAVPVAPYL SSALNEDLFA GLVLLNIKID GWVRWKVGSW VSGSYRLHVN CPAFITVTGK LTGTGPAIKY
201: QLVQRCAVDV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.