Factsheet for TraesCS5D01G133400.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	plastid, secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G125000.1	Wheat	cytosol, extracellular, plasma membrane	84.13	100.0
TraesCS5A01G125800.1	Wheat	golgi, plasma membrane, plastid	99.52	99.52
TraesCS5D01G133300.1	Wheat	cytosol	88.46	88.46
EES16682	Sorghum	golgi, plasma membrane, plastid	88.94	86.45
Os12t0159600-01	Rice	plastid	87.5	85.85
Zm00001d023468_P001	Maize	extracellular	85.1	83.1
TraesCS4D01G113300.1	Wheat	peroxisome, plasma membrane, plastid	79.81	77.93
HORVU5Hr1G040160.3	Barley	golgi, peroxisome	98.08	74.73
GSMUA_Achr6P35580_001	Banana	cytosol, extracellular, plastid	28.37	61.46
GSMUA_Achr9P08960_001	Banana	plasma membrane	58.65	58.1
TraesCS5D01G498400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	54.81	53.27
TraesCS2D01G210700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	54.33	52.56
PGSC0003DMT400050538	Potato	plasma membrane	50.96	50.72
Solyc11g068890.1.1	Tomato	plasma membrane	50.0	49.76
PGSC0003DMT400015090	Potato	plasma membrane	49.52	49.52
TraesCS7D01G323900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	50.96	49.07
TraesCS2D01G596200.1	Wheat	cytosol, golgi, plasma membrane	51.92	48.87
TraesCS2D01G295700.1	Wheat	extracellular, plasma membrane	50.48	48.61
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	48.08	48.31
CDY29084	Canola	mitochondrion	39.9	48.26
Solyc06g074040.1.1	Tomato	plasma membrane	48.08	48.08
CDX90600	Canola	plasma membrane	47.12	47.12
VIT_06s0080g01200.t01	Wine grape	plasma membrane	47.12	47.12
Bra002396.1-P	Field mustard	plasma membrane	46.63	46.86
Bra012801.1-P	Field mustard	plasma membrane	46.63	46.63
Bra006927.1-P	Field mustard	cytosol	46.63	46.63
Bra035001.1-P	Field mustard	plasma membrane	46.15	46.6
CDY69513	Canola	plasma membrane	46.15	46.6
CDY08687	Canola	plasma membrane	46.15	46.6
CDY72430	Canola	cytosol	46.15	46.15
CDY69198	Canola	cytosol	46.15	46.15
AT3G52470.1	Thale cress	extracellular, plasma membrane	45.67	45.67
CDY68967	Canola	cytosol	45.67	45.67
Bra033428.1-P	Field mustard	cytosol	45.67	45.67
CDX92375	Canola	plasma membrane	45.19	45.41
AT3G44220.1	Thale cress	plasma membrane	44.71	45.15
CDX98590	Canola	plasma membrane	44.71	44.93
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	45.19	44.76
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	45.19	44.55
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	45.19	44.55
AT3G11660.1	Thale cress	plasma membrane	44.71	44.5
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	44.71	44.29
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	44.71	44.08
AT5G06330.1	Thale cress	plasma membrane	43.75	43.96
KRG96252	Soybean	plasma membrane	44.23	43.81
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	44.71	43.46
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	44.23	43.4
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	44.23	43.4
Bra038671.1-P	Field mustard	plasma membrane	43.75	43.13
CDY01043	Canola	mitochondrion	43.75	42.92
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.27	42.25
KRH32836	Soybean	plasma membrane	42.31	42.11
CDY32068	Canola	plasma membrane	41.35	41.75
KRH72197	Soybean	plasma membrane	41.35	41.55
CDY40419	Canola	plasma membrane	41.35	41.35
Bra017276.1-P	Field mustard	plasma membrane	41.35	41.35
CDY35671	Canola	plasma membrane	41.35	41.15
KRH26671	Soybean	plasma membrane	43.27	40.72
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	40.87	40.28
KRH22643	Soybean	plasma membrane	41.83	39.91
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	40.38	39.81
CDY09123	Canola	plasma membrane	39.9	39.71
Bra020177.1-P	Field mustard	plasma membrane	38.94	38.76
CDY55755	Canola	plasma membrane	39.42	38.5
CDX81001	Canola	plastid	39.42	38.14
Bra005892.1-P	Field mustard	plasma membrane	38.94	38.03
KRH67997	Soybean	plastid	44.71	36.9
AT5G05657.1	Thale cress	plastid	23.08	35.04
TraesCS5D01G326100.1	Wheat	cytosol, plasma membrane, vacuole	33.65	31.25
CDX95339	Canola	plasma membrane	44.71	31.21
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.37	28.64
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	25.0	25.74
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	25.0	25.62
TraesCS1D01G233500.1	Wheat	peroxisome	30.29	22.91
TraesCS6D01G332300.1	Wheat	plastid	27.88	22.75

Protein Annotations

EnsemblPlants:TraesCS5D01G133400.1	EnsemblPlantsGene:TraesCS5D01G133400	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF11	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5D:+:213129137..213129960

Molecular Weight (calculated)

22774.4 Da

IEP (calculated)

8.460

GRAVY (calculated)

0.167

Length

208 amino acids

Sequence
(BLAST)

001: MGKDCGNHGD DHLRNGCRRL LAVLLVLAFI VAIITLIVYL VLRPTHPRFF LQDASLRQLN LSNSSGLLST SIQVTVASRN PNDRVGVYYD RLDVYASYKY
101: QQITVAASLP AVYQGHGDVD VWSPVLDGPN VPFAPYLASA ISQDCQAGYL ILQVKIDGRV RWKVGSWISG HYHLFVTCPA FLVTSGGNGA PGASGFKFQT
201: TTYCHVEV

Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)

001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV

Arabidopsis Description

NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.