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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72430 Canola cytosol 67.11 96.15
CDX90600 Canola plasma membrane 65.1 93.27
CDY69198 Canola cytosol 64.09 91.83
CDY68967 Canola cytosol 64.09 91.83
CDY29084 Canola mitochondrion 50.67 87.79
AT3G52470.1 Thale cress extracellular, plasma membrane 59.06 84.62
CDY32068 Canola plasma membrane 51.68 74.76
CDY40419 Canola plasma membrane 51.34 73.56
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 45.64 64.15
CDY01043 Canola mitochondrion 45.3 63.68
KRH72197 Soybean plasma membrane 38.26 55.07
KRH32836 Soybean plasma membrane 38.59 55.02
KRG96252 Soybean plasma membrane 38.26 54.29
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 37.58 54.11
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 38.26 54.03
CDY08687 Canola plasma membrane 36.58 52.91
CDY69513 Canola plasma membrane 36.58 52.91
PGSC0003DMT400042351 Potato extracellular, plasma membrane 36.58 51.66
PGSC0003DMT400072342 Potato extracellular, plasma membrane 35.91 50.71
CDY55755 Canola plasma membrane 35.57 49.77
CDX81001 Canola plastid 34.56 47.91
GSMUA_Achr9P08960_001 Banana plasma membrane 32.55 46.19
CDY35671 Canola plasma membrane 31.88 45.45
CDX98590 Canola plasma membrane 31.54 45.41
CDX92375 Canola plasma membrane 31.54 45.41
GSMUA_Achr10P... Banana plasma membrane 31.88 45.02
KRH67997 Soybean plastid 37.92 44.84
TraesCS5D01G133400.1 Wheat golgi, plasma membrane, plastid 31.21 44.71
TraesCS5A01G125800.1 Wheat golgi, plasma membrane, plastid 31.21 44.71
GSMUA_Achr8P34450_001 Banana plasma membrane 31.21 44.5
Os11t0157200-03 Rice plasma membrane 31.21 44.29
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 31.54 43.93
CDY09123 Canola plasma membrane 30.54 43.54
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 30.87 43.19
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 30.87 43.19
GSMUA_Achr11P... Banana cytosol, extracellular, mitochondrion, peroxisome 25.84 43.02
TraesCS5B01G125000.1 Wheat cytosol, extracellular, plasma membrane 25.17 42.86
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 30.54 42.72
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 30.54 42.72
Zm00001d052776_P001 Maize extracellular 30.54 42.72
EES16682 Sorghum golgi, plasma membrane, plastid 30.54 42.52
GSMUA_Achr7P03290_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, plastid 30.2 42.25
Os12t0159600-01 Rice plastid 29.87 41.98
TraesCS5B01G124900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 29.19 41.83
TraesCS7B01G227800.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 30.2 41.67
HORVU7Hr1G078320.1 Barley cytosol 30.2 41.67
TraesCS5D01G133300.1 Wheat cytosol 28.86 41.35
Zm00001d023468_P001 Maize extracellular 29.53 41.31
GSMUA_Achr6P19500_001 Banana endoplasmic reticulum, plasma membrane 29.19 41.23
TraesCS7A01G327200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 29.87 41.2
TraesCS7D01G323900.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 29.87 41.2
Zm00001d041927_P001 Maize endoplasmic reticulum, golgi, plasma membrane 29.19 41.04
GSMUA_Achr9P29670_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 24.16 40.91
EES13132 Sorghum cytosol 29.19 39.73
Zm00001d034977_P001 Maize cytosol, mitochondrion, peroxisome, plasma membrane 28.52 39.72
Os04t0685400-01 Rice golgi, plasma membrane, plastid 29.19 39.55
Zm00001d026664_P001 Maize extracellular 29.19 39.37
EES08013 Sorghum golgi, plasma membrane, plastid 28.19 39.25
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 27.52 38.32
Zm00001d016733_P001 Maize extracellular, plasma membrane 23.83 37.77
TraesCS2D01G596200.1 Wheat cytosol, golgi, plasma membrane 27.85 37.56
TraesCS5A01G125600.1 Wheat cytosol, peroxisome, plasma membrane 27.85 37.22
TraesCS2A01G583600.1 Wheat cytosol, golgi, plasma membrane 27.52 37.1
TraesCS2B01G603000.1 Wheat cytosol, golgi, plasma membrane 27.52 37.1
Os08t0102700-01 Rice cytosol, peroxisome, plasma membrane 27.85 36.56
HORVU2Hr1G123370.1 Barley cytosol, golgi, plasma membrane 26.85 36.36
TraesCS2B01G232700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 26.17 36.28
TraesCS2D01G210700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 26.17 36.28
TraesCS2A01G205300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 26.17 36.28
HORVU2Hr1G073830.1 Barley extracellular, plasma membrane 26.17 36.11
EES06921 Sorghum endoplasmic reticulum 25.5 35.85
TraesCS2D01G295700.1 Wheat extracellular, plasma membrane 25.84 35.65
TraesCS2A01G297700.1 Wheat extracellular, plasma membrane 25.84 35.65
TraesCS2B01G313900.1 Wheat extracellular, plasma membrane 25.84 35.65
Zm00001d003751_P001 Maize extracellular, golgi, plasma membrane 26.85 35.56
TraesCS5D01G498400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 25.17 35.05
TraesCS5B01G498200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 25.17 35.05
TraesCS5A01G484900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 25.17 35.05
EES12138 Sorghum extracellular, golgi, plasma membrane 25.84 34.84
Os04t0416700-01 Rice golgi, plasma membrane 25.5 34.55
HORVU5Hr1G040160.3 Barley golgi, peroxisome 31.54 34.43
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 11.07 34.38
HORVU5Hr1G114220.1 Barley endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 24.5 33.8
Zm00001d025371_P001 Maize extracellular, golgi, plasma membrane 25.17 33.48
CDY51789 Canola endoplasmic reticulum, nucleus, plasma membrane 23.49 32.86
CDY28821 Canola endoplasmic reticulum, nucleus, plasma membrane 23.49 32.86
CDY14357 Canola plastid 23.49 32.86
HORVU2Hr1G040910.1 Barley peroxisome 26.17 32.77
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 24.5 32.59
CDY20226 Canola endoplasmic reticulum, nucleus, plasma membrane 22.82 31.92
HORVU2Hr1G066420.1 Barley mitochondrion, plastid 16.44 24.62
CDX91852 Canola cytosol, peroxisome, plasma membrane 17.79 23.14
CDY51712 Canola cytosol, peroxisome, plasma membrane 17.79 22.94
CDX74380 Canola cytosol, peroxisome, plasma membrane 17.45 22.71
CDY07145 Canola cytosol, peroxisome, plasma membrane 17.11 21.98
Protein Annotations
EnsemblPlants:CDX95339EnsemblPlantsGene:GSBRNA2T00101013001GO:A0A078E470InterPro:LEA_2PANTHER:PTHR31415PANTHER:PTHR31415:SF2
PFAM:PF03168ProteinID:CDX95339ProteinID:CDX95339.1SEG:segTMHMM:TMhelixUniParc:UPI0004EEE3E7
MapMan:35.1:::::
Description
BnaC04g28190D
Coordinates
chrLK031888:+:393358..394708
Molecular Weight (calculated)
33656.4 Da
IEP (calculated)
11.457
GRAVY (calculated)
-0.195
Length
298 amino acids
Sequence
(BLAST)
001: MSKDCGNHGG GKEAAVRRIC AAVIAFIIIV LITIFLVWVI LRPTKPRFIL QDATVFAFNL SQPNLLTTNF QITFASRNPN SKIGIYYDRL HVYATYRNQQ
101: ITLRTAIPPT YQGHKEDNVW SPFVYGTAVP IAPYNSVALG DEQGHGLVQL MIRADGRVRW KVGTLITGKY HIHVRCPALI NLGNKAAGVI VGDNAVKYTL
201: GKAGRQEGRN RKKSSGQWLT RNLRQTLSRK QPQSLVPNRI LQQGNAVRIF LARTPSPSLE EHLVRLHLVL NRTLQMWNPL KKKKKKGKSW NMRMIFAL
Best Arabidopsis Sequence Match ( AT3G52470.1 )
(BLAST)
001: MSKDCGNHGG GKEVVVRKLC AAIIAFIVIV LITIFLVWVI LRPTKPRFVL QDATVYAFNL SQPNLLTSNF QVTIASRNPN SKIGIYYDRL HVYATYMNQQ
101: ITLRTAIPPT YQGHKEVNVW SPFVYGTAVP IAPYNSVALG EEKDRGFVGL MIRADGTVRW KVRTLITGKY HIHVRCQAFI NLGNKAAGVL VGDNAVKYTL
201: ANKCSVNV
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SVC8]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.