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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY40419 Canola plasma membrane 96.12 95.19
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 82.04 80.48
CDX90600 Canola plasma membrane 78.16 77.4
CDY72430 Canola cytosol 76.7 75.96
CDY29084 Canola mitochondrion 62.62 75.0
CDY69198 Canola cytosol 75.24 74.52
CDY68967 Canola cytosol 75.24 74.52
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 70.87 69.19
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 70.87 69.19
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 64.56 62.74
CDY01043 Canola mitochondrion 63.11 61.32
KRH72197 Soybean plasma membrane 56.31 56.04
KRH32836 Soybean plasma membrane 56.8 55.98
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 53.88 53.62
KRG96252 Soybean plasma membrane 53.88 52.86
CDX95339 Canola plasma membrane 74.76 51.68
CDY69513 Canola plasma membrane 51.46 51.46
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 52.43 51.18
CDY08687 Canola plasma membrane 50.97 50.97
PGSC0003DMT400042351 Potato extracellular, plasma membrane 50.97 49.76
CDY55755 Canola plasma membrane 50.0 48.36
GSMUA_Achr9P08960_001 Banana plasma membrane 48.06 47.14
CDX81001 Canola plastid 49.03 46.98
PGSC0003DMT400072342 Potato extracellular, plasma membrane 47.57 46.45
CDY35671 Canola plasma membrane 46.6 45.93
CDX98590 Canola plasma membrane 45.15 44.93
CDX92375 Canola plasma membrane 45.15 44.93
CDY09123 Canola plasma membrane 45.15 44.5
GSMUA_Achr8P34450_001 Banana plasma membrane 44.66 44.02
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 45.15 43.46
KRH67997 Soybean plastid 52.91 43.25
GSMUA_Achr10P... Banana plasma membrane 44.17 43.13
GSMUA_Achr6P19500_001 Banana endoplasmic reticulum, plasma membrane 42.72 41.71
TraesCS5D01G133400.1 Wheat golgi, plasma membrane, plastid 41.75 41.35
TraesCS5A01G125800.1 Wheat golgi, plasma membrane, plastid 41.75 41.35
GSMUA_Achr7P03290_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, plastid 42.72 41.31
HORVU7Hr1G078320.1 Barley cytosol 43.2 41.2
TraesCS7B01G227800.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 43.2 41.2
Os12t0159600-01 Rice plastid 42.23 41.04
GSMUA_Achr9P29670_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 34.95 40.91
GSMUA_Achr11P... Banana cytosol, extracellular, mitochondrion, peroxisome 35.44 40.78
TraesCS7D01G323900.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 42.72 40.74
TraesCS7A01G327200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 42.72 40.74
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 18.93 40.62
TraesCS5B01G125000.1 Wheat cytosol, extracellular, plasma membrane 34.47 40.57
Os11t0157200-03 Rice plasma membrane 41.26 40.48
TraesCS5B01G124900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 40.78 40.38
Zm00001d041927_P001 Maize endoplasmic reticulum, golgi, plasma membrane 40.78 39.62
TraesCS5D01G133300.1 Wheat cytosol 39.81 39.42
Zm00001d016733_P001 Maize extracellular, plasma membrane 35.92 39.36
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 40.29 38.97
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 40.29 38.97
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 40.29 38.97
EES16682 Sorghum golgi, plasma membrane, plastid 40.29 38.78
Zm00001d052776_P001 Maize extracellular 39.81 38.5
Zm00001d023468_P001 Maize extracellular 39.81 38.5
Os08t0102700-01 Rice cytosol, peroxisome, plasma membrane 42.23 38.33
Zm00001d034977_P001 Maize cytosol, mitochondrion, peroxisome, plasma membrane 39.81 38.32
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 39.32 38.03
EES13132 Sorghum cytosol 40.29 37.9
EES08013 Sorghum golgi, plasma membrane, plastid 39.32 37.85
Os04t0685400-01 Rice golgi, plasma membrane, plastid 40.29 37.73
TraesCS2D01G596200.1 Wheat cytosol, golgi, plasma membrane 39.81 37.1
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 38.35 36.92
EES06921 Sorghum endoplasmic reticulum 37.86 36.79
TraesCS2A01G583600.1 Wheat cytosol, golgi, plasma membrane 39.32 36.65
TraesCS2B01G603000.1 Wheat cytosol, golgi, plasma membrane 39.32 36.65
Zm00001d026664_P001 Maize extracellular 39.32 36.65
HORVU2Hr1G123370.1 Barley cytosol, golgi, plasma membrane 38.35 35.91
TraesCS2B01G313900.1 Wheat extracellular, plasma membrane 37.38 35.65
TraesCS2D01G295700.1 Wheat extracellular, plasma membrane 37.38 35.65
HORVU2Hr1G073830.1 Barley extracellular, plasma membrane 37.38 35.65
TraesCS2B01G232700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 36.89 35.35
TraesCS2D01G210700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 36.89 35.35
TraesCS2A01G205300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 36.89 35.35
TraesCS2A01G297700.1 Wheat extracellular, plasma membrane 36.89 35.19
Zm00001d003751_P001 Maize extracellular, golgi, plasma membrane 38.35 35.11
EES12138 Sorghum extracellular, golgi, plasma membrane 37.38 34.84
TraesCS5A01G484900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 35.92 34.58
TraesCS5D01G498400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 35.92 34.58
TraesCS5B01G498200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 35.92 34.58
Os04t0416700-01 Rice golgi, plasma membrane 36.89 34.55
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 37.38 34.38
TraesCS5A01G125600.1 Wheat cytosol, peroxisome, plasma membrane 36.89 34.08
Zm00001d025371_P001 Maize extracellular, golgi, plasma membrane 36.41 33.48
HORVU5Hr1G114220.1 Barley endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 34.95 33.33
HORVU5Hr1G040160.3 Barley golgi, peroxisome 42.72 32.23
HORVU2Hr1G040910.1 Barley peroxisome 36.89 31.93
CDY20226 Canola endoplasmic reticulum, nucleus, plasma membrane 33.01 31.92
CDY14357 Canola plastid 33.01 31.92
CDY51789 Canola endoplasmic reticulum, nucleus, plasma membrane 32.04 30.99
CDY28821 Canola endoplasmic reticulum, nucleus, plasma membrane 32.04 30.99
HORVU2Hr1G066420.1 Barley mitochondrion, plastid 23.3 24.12
CDX91852 Canola cytosol, peroxisome, plasma membrane 26.21 23.58
CDY51712 Canola cytosol, peroxisome, plasma membrane 26.21 23.38
CDY07145 Canola cytosol, peroxisome, plasma membrane 26.21 23.28
CDX74380 Canola cytosol, peroxisome, plasma membrane 25.73 23.14
Protein Annotations
EnsemblPlants:CDY32068EnsemblPlantsGene:GSBRNA2T00051413001GO:A0A078H5H9GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31415PANTHER:PTHR31415:SF2PFAM:PF03168ProteinID:CDY32068ProteinID:CDY32068.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EC1822UniProt:A0A078H5H9MapMan:35.1:
Description
BnaC04g44980DBnaC04g44980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5H9]
Coordinates
chrLK032287:-:32021..33211
Molecular Weight (calculated)
23152.2 Da
IEP (calculated)
9.629
GRAVY (calculated)
0.107
Length
206 amino acids
Sequence
(BLAST)
001: MSKDCEKHGG GGTARIICRV IIGFIIIVLI TIFLVWVILQ PTKPRFILQD ATVFAFNLTQ PNLLTSNFQV TLVIRNRNSK IGIYYDRLHV YATYRNQQIT
101: YPTAIPPTYQ GHKEDSVWSP LIYGNAVSVA PYNAVALGDE QSRGFVELVI RADGRVRWKV GTLITGKYHL HVRCHAYINL ADKSNGVIVG ENIVKYTVDN
201: QCSVNV
Best Arabidopsis Sequence Match ( AT2G35960.1 )
(BLAST)
001: MTTKDCGNHG GGGGGGTASR ICGVIIGFII IVLITIFLVW IILQPTKPRF ILQDATVYAF NLSQPNLLTS NFQITIASRN RNSRIGIYYD RLHVYATYRN
101: QQITLRTAIP PTYQGHKEDN VWSPFVYGNS VPIAPFNAVA LGDEQNRGFV TLIIRADGRV RWKVGTLITG KYHLHVRCQA FINLADKAAG VHVGENAVKY
201: MLINKCSVNV
Arabidopsis Description
NHL12NDR1/HIN1-like protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ54]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.