Factsheet for Zm00001d052776_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08013	Sorghum	golgi, plasma membrane, plastid	87.79	87.38
Os11t0157200-03	Rice	plasma membrane	77.46	78.57
Zm00001d023468_P001	Maize	extracellular	76.53	76.53
HORVU4Hr1G021190.1	Barley	golgi, plasma membrane, plastid	76.06	76.06
Zm00001d041927_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	75.59	75.94
TraesCS4B01G115700.1	Wheat	peroxisome, plasma membrane, plastid	75.12	75.12
TraesCS4A01G199700.1	Wheat	golgi, plasma membrane, plastid	74.65	74.65
TraesCS4D01G113300.1	Wheat	peroxisome, plasma membrane, plastid	74.18	74.18
GSMUA_Achr6P35580_001	Banana	cytosol, extracellular, plastid	24.88	55.21
GSMUA_Achr9P08960_001	Banana	plasma membrane	52.11	52.86
Zm00001d016733_P001	Maize	extracellular, plasma membrane	45.07	51.06
CDY29084	Canola	mitochondrion	39.44	48.84
Zm00001d003751_P001	Maize	extracellular, golgi, plasma membrane	50.23	47.56
Zm00001d025371_P001	Maize	extracellular, golgi, plasma membrane	49.3	46.88
PGSC0003DMT400015090	Potato	plasma membrane	45.54	46.63
CDX90600	Canola	plasma membrane	45.54	46.63
PGSC0003DMT400050538	Potato	plasma membrane	45.54	46.41
Bra012801.1-P	Field mustard	plasma membrane	45.07	46.15
Bra006927.1-P	Field mustard	cytosol	45.07	46.15
VIT_06s0080g01200.t01	Wine grape	plasma membrane	45.07	46.15
Solyc06g074040.1.1	Tomato	plasma membrane	44.6	45.67
CDY69198	Canola	cytosol	44.6	45.67
Solyc11g068890.1.1	Tomato	plasma membrane	44.6	45.45
Bra002396.1-P	Field mustard	plasma membrane	44.13	45.41
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	44.13	45.41
Zm00001d026664_P001	Maize	extracellular	46.95	45.25
CDY68967	Canola	cytosol	44.13	45.19
CDY72430	Canola	cytosol	44.13	45.19
Bra033428.1-P	Field mustard	cytosol	43.66	44.71
CDY69513	Canola	plasma membrane	43.19	44.66
Bra035001.1-P	Field mustard	plasma membrane	43.19	44.66
AT3G44220.1	Thale cress	plasma membrane	43.19	44.66
CDY08687	Canola	plasma membrane	43.19	44.66
AT3G52470.1	Thale cress	extracellular, plasma membrane	43.19	44.23
CDX92375	Canola	plasma membrane	42.72	43.96
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	43.19	43.81
CDX98590	Canola	plasma membrane	42.25	43.48
AT5G06330.1	Thale cress	plasma membrane	42.25	43.48
AT3G11660.1	Thale cress	plasma membrane	42.25	43.06
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	41.78	42.38
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.25	42.06
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	41.78	41.78
Zm00001d034977_P001	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	41.78	41.59
Bra038671.1-P	Field mustard	plasma membrane	40.85	41.23
KRH26671	Soybean	plasma membrane	42.72	41.18
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	40.38	40.76
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	39.91	40.28
CDY35671	Canola	plasma membrane	39.44	40.19
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	39.91	40.09
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	39.91	40.09
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	39.44	39.81
CDY32068	Canola	plasma membrane	38.5	39.81
CDY01043	Canola	mitochondrion	39.44	39.62
KRH22643	Soybean	plasma membrane	40.38	39.45
Bra017276.1-P	Field mustard	plasma membrane	38.5	39.42
CDY40419	Canola	plasma membrane	38.5	39.42
KRH32836	Soybean	plasma membrane	38.5	39.23
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	38.5	38.86
CDY09123	Canola	plasma membrane	38.03	38.76
KRG96252	Soybean	plasma membrane	38.03	38.57
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	38.03	38.39
KRH72197	Soybean	plasma membrane	37.09	38.16
Bra020177.1-P	Field mustard	plasma membrane	37.09	37.8
CDY55755	Canola	plasma membrane	34.74	34.74
CDX81001	Canola	plastid	34.74	34.42
AT5G05657.1	Thale cress	plastid	22.07	34.31
Bra005892.1-P	Field mustard	plasma membrane	34.27	34.27
KRH67997	Soybean	plastid	39.44	33.33
CDX95339	Canola	plasma membrane	42.72	30.54
Zm00001d021289_P001	Maize	mitochondrion	30.05	29.22
Zm00001d037915_P001	Maize	cytosol, peroxisome, plastid	30.52	24.81

Protein Annotations

EMBL:EU970273	EnsemblPlants:Zm00001d052776_P001	EnsemblPlants:Zm00001d052776_T001	EnsemblPlantsGene:Zm00001d052776	EntrezGene:100284961	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF11	PFAM:PF03168
ProteinID:AQK58042.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000182E80A	UniProt:B6TZ58	MapMan:35.1

Description

VAMP protein SEC22

Coordinates

chr4:-:200548688..200549329

Molecular Weight (calculated)

23253.1 Da

IEP (calculated)

9.264

GRAVY (calculated)

0.162

Length

213 amino acids

Sequence
(BLAST)

001: MGKDCGNHGD DDFRQSCRRL LAILLTMALL VGVVALIVYL VLRPTHPRFY LQDAALRQLD LSNGSAPLLS TAAQVTVASR NPNGRVGVYY DRLDVYATYK
101: YQQVTLASRL PAVYQGHGDV DVWSPVLAGP AVPFAPFLAD ALAKDLAAGY LVLQLRIDGR VRWKVGSWVS GHYHMFVTCP AYFISSGAGS GYRGAVGAHG
201: LRFQTTTYCR VEV

Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)

001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV

Arabidopsis Description

NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.