Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77870 | Sorghum | plastid | 85.5 | 70.22 |
| Os05t0367900-01 | Rice | plastid | 67.18 | 67.69 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 60.31 | 60.31 |
| TraesCS1A01G232200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 58.4 | 60.24 |
| TraesCS1B01G245500.1 | Wheat | cytosol | 57.63 | 59.68 |
| TraesCS1D01G233500.1 | Wheat | peroxisome | 58.4 | 55.64 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 35.5 | 46.27 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 31.68 | 41.09 |
| Zm00001d021289_P001 | Maize | mitochondrion | 33.59 | 40.18 |
| KRH68967 | Soybean | extracellular, plasma membrane | 28.63 | 38.07 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 28.63 | 38.07 |
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 32.06 | 36.36 |
| Bra037412.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 32.06 | 36.36 |
| AT4G01410.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 31.3 | 36.12 |
| CDY07145 | Canola | cytosol, peroxisome, plasma membrane | 31.68 | 35.78 |
| CDX91852 | Canola | cytosol, peroxisome, plasma membrane | 29.77 | 34.06 |
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 29.39 | 33.62 |
| Bra000927.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 29.39 | 33.62 |
| KRH47782 | Soybean | cytosol | 30.53 | 32.13 |
| KRH06353 | Soybean | cytosol | 29.77 | 31.58 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 26.34 | 31.22 |
| Zm00001d023468_P001 | Maize | extracellular | 25.19 | 30.99 |
| Zm00001d016733_P001 | Maize | extracellular, plasma membrane | 22.14 | 30.85 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 26.72 | 30.7 |
| Zm00001d041927_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 24.81 | 30.66 |
| Zm00001d052776_P001 | Maize | extracellular | 24.81 | 30.52 |
| Zm00001d026664_P001 | Maize | extracellular | 25.19 | 29.86 |
| Zm00001d034977_P001 | Maize | cytosol, mitochondrion, peroxisome, plasma membrane | 22.52 | 27.57 |
| Zm00001d025371_P001 | Maize | extracellular, golgi, plasma membrane | 22.14 | 25.89 |
| Zm00001d003751_P001 | Maize | extracellular, golgi, plasma membrane | 21.76 | 25.33 |
Protein Annotations
| EnsemblPlants:Zm00001d037915_P001 | EnsemblPlants:Zm00001d037915_T001 | EnsemblPlantsGene:Zm00001d037915 | EntrezGene:103630213 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF24 | PFAM:PF03168 | ProteinID:AQK85191.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0002A9D923 | UniProt:A0A1D6M1S3 | MapMan:35.2 | : |
Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Coordinates
chr6:-:141874632..141875420
Molecular Weight (calculated)
26881.5 Da
IEP (calculated)
9.680
GRAVY (calculated)
0.318
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAEHHLPPE HADHHRGGRK GVRADDLKPG WWRRSPRYSY YYGGGEGGGA VRALCFAVLV LLLAAGITLL VLYVVYRPSH PTFAVTSAAV LALYNATANV
101: AAGAGAGPAP ATALAASFQF TLVLGNPSGR SAARYDRLAA YVAYRGEAVT APTPMPPLAQ DAGTAVAAAP VLGAGVAAPV PVSPDAAAAL AADVANAVLP
201: LRVVLLGRVR FVHEPFHRGW RSLYARCDLL IGVRKIGIGN GGAAGGVPLA PLLGDPSCNV DM
101: AAGAGAGPAP ATALAASFQF TLVLGNPSGR SAARYDRLAA YVAYRGEAVT APTPMPPLAQ DAGTAVAAAP VLGAGVAAPV PVSPDAAAAL AADVANAVLP
201: LRVVLLGRVR FVHEPFHRGW RSLYARCDLL IGVRKIGIGN GGAAGGVPLA PLLGDPSCNV DM
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.