Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G232200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 95.26 | 94.88 |
| TraesCS1D01G233500.1 | Wheat | peroxisome | 97.23 | 89.45 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 92.49 | 89.31 |
| Os05t0367900-01 | Rice | plastid | 71.94 | 70.0 |
| Zm00001d037915_P001 | Maize | cytosol, peroxisome, plastid | 59.68 | 57.63 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 40.71 | 51.24 |
| OQU77870 | Sorghum | plastid | 58.1 | 46.08 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 36.76 | 46.04 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 33.2 | 42.64 |
| KRH68967 | Soybean | extracellular, plasma membrane | 32.81 | 42.13 |
| TraesCS5B01G320400.1 | Wheat | cytosol, plasma membrane, vacuole | 35.18 | 39.56 |
| Bra037412.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 35.57 | 38.96 |
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 35.57 | 38.96 |
| CDY07145 | Canola | cytosol, peroxisome, plasma membrane | 35.57 | 38.79 |
| AT4G01410.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 34.78 | 38.77 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 33.2 | 38.01 |
| CDX91852 | Canola | cytosol, peroxisome, plasma membrane | 33.6 | 37.12 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 33.2 | 36.84 |
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 33.2 | 36.68 |
| Bra000927.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 33.2 | 36.68 |
| KRH47782 | Soybean | cytosol | 33.2 | 33.73 |
| KRH06353 | Soybean | cytosol | 32.81 | 33.6 |
| TraesCS7B01G227800.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 27.27 | 31.94 |
| TraesCS4B01G115700.1 | Wheat | peroxisome, plasma membrane, plastid | 26.09 | 30.99 |
| TraesCS5B01G125000.1 | Wheat | cytosol, extracellular, plasma membrane | 21.34 | 30.86 |
| TraesCS2B01G603000.1 | Wheat | cytosol, golgi, plasma membrane | 26.88 | 30.77 |
| TraesCS2B01G232700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 25.69 | 30.23 |
| TraesCS5B01G498200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 24.9 | 29.44 |
| TraesCS5B01G124900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 24.11 | 29.33 |
| TraesCS2B01G313900.1 | Wheat | extracellular, plasma membrane | 24.51 | 28.7 |
| TraesCS6B01G383000.1 | Wheat | endoplasmic reticulum | 19.76 | 24.51 |
| TraesCS5B01G103800.1 | Wheat | cytosol | 17.39 | 20.95 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G245500.1 | EnsemblPlantsGene:TraesCS1B01G245500 | InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF24 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:+:434644472..434645233
Molecular Weight (calculated)
26241.7 Da
IEP (calculated)
9.511
GRAVY (calculated)
0.234
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEHHLPPEP TDHHKGGKAV HADDLKPARR RRYGYYGSTG SGALSTICSV LLLLILLAGV IALVLYLVYR PNSPAFTVTN IAVYSLSNVT GPSAGLPAAG
101: ARAPNSVAAS FQCALVIRNP NGRSSARYDR LTAYVVYRGE AITAPAEMPP LVQDPDSAVV VAPVIGGGGA APVPVSPEAA AALANDVSYG VVSLRVVLLG
201: RVRFVSGPFR SGWRSMYARC DMLVGVRKAP GNVGAAAVPE APLFGNPSCN VDI
101: ARAPNSVAAS FQCALVIRNP NGRSSARYDR LTAYVVYRGE AITAPAEMPP LVQDPDSAVV VAPVIGGGGA APVPVSPEAA AALANDVSYG VVSLRVVLLG
201: RVRFVSGPFR SGWRSMYARC DMLVGVRKAP GNVGAAAVPE APLFGNPSCN VDI
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.