Factsheet for Solyc10g005040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
endoplasmic reticulum 2
plastid 1
extracellular 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029400	Potato	cytosol, peroxisome, plastid, vacuole	91.86	89.04
KRG97253	Soybean	endoplasmic reticulum, extracellular, plasma membrane	51.13	57.36
VIT_15s0048g02530.t01	Wine grape	plasma membrane	51.58	56.44
KRH68967	Soybean	extracellular, plasma membrane	50.23	56.35
GSMUA_AchrUn_...	Banana	golgi, plasma membrane	46.15	50.75
CDX91852	Canola	cytosol, peroxisome, plasma membrane	47.96	46.29
Bra000927.1-P	Field mustard	cytosol, peroxisome, plasma membrane	47.51	45.85
CDX74380	Canola	cytosol, peroxisome, plasma membrane	47.51	45.85
AT4G01410.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	47.06	45.81
CDY07145	Canola	cytosol, peroxisome, plasma membrane	46.15	43.97
Bra037412.1-P	Field mustard	cytosol, peroxisome, plasma membrane	45.7	43.72
CDY51712	Canola	cytosol, peroxisome, plasma membrane	45.7	43.72
KRH47782	Soybean	cytosol	47.06	41.77
KRH06353	Soybean	cytosol	46.15	41.3
TraesCS5D01G326100.1	Wheat	cytosol, plasma membrane, vacuole	34.39	33.93
TraesCS5B01G320400.1	Wheat	cytosol, plasma membrane, vacuole	34.39	33.78
Zm00001d021289_P001	Maize	mitochondrion	33.03	33.33
TraesCS5A01G320200.1	Wheat	cytosol, peroxisome, vacuole	33.94	33.33
TraesCS1B01G245500.1	Wheat	cytosol	38.01	33.2
TraesCS1A01G232200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	38.01	33.07
HORVU1Hr1G058400.1	Barley	cytosol, endoplasmic reticulum, peroxisome	38.46	32.44
Os09t0532200-00	Rice	plastid	31.67	32.11
EER99240	Sorghum	golgi	31.67	31.96
Os05t0367900-01	Rice	plastid	36.65	31.15
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	29.41	30.81
TraesCS1D01G233500.1	Wheat	peroxisome	37.56	30.18
HORVU5Hr1G081610.1	Barley	golgi, nucleus, plastid	34.84	29.28
Solyc06g074040.1.1	Tomato	plasma membrane	26.24	27.88
Solyc11g068890.1.1	Tomato	plasma membrane	25.34	26.79
Zm00001d037915_P001	Maize	cytosol, peroxisome, plastid	31.22	26.34
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	24.89	25.82
OQU77870	Sorghum	plastid	31.67	21.94

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046658	UniProt:K4CX38	InterPro:LEA_2
PFAM:PF03168	PANTHER:PTHR31415	PANTHER:PTHR31415:SF9	EnsemblPlantsGene:Solyc10g005040.2	EnsemblPlants:Solyc10g005040.2.1	TMHMM:TMhelix
UniParc:UPI000276C547	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:47927..49272

Molecular Weight (calculated)

24533.4 Da

IEP (calculated)

9.950

GRAVY (calculated)

0.168

Length

221 amino acids

Sequence
(BLAST)

001: MSDYDQQKIP NESVGYPQKP SPIAISSNDP SRRSPAKTLC ALLFILVILA GLVVLILWLV YRPHKPNFSL VDAAIYDLNV TSPPYMSTSM QFTVLARNPN
101: RRVRLDYDQF SAIVYYKGQA ITPPALLPPL FQKTKSTVIL SPLIRGASVP VSVEVANGLL IDEVYGVVGL RLVLMGKMRY KAGIIKTKHY QVYVKCDMLV
201: GYKKGFMGQV PLLGSSDCQL H

Best Arabidopsis Sequence Match ( AT4G01410.1 )
(BLAST)

001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV

Arabidopsis Description

At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.