Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G320200.1 | Wheat | cytosol, peroxisome, vacuole | 65.14 | 63.11 |
| TraesCS5B01G320400.1 | Wheat | cytosol, plasma membrane, vacuole | 64.22 | 62.22 |
| Zm00001d021289_P001 | Maize | mitochondrion | 61.47 | 61.19 |
| TraesCS5D01G326100.1 | Wheat | cytosol, plasma membrane, vacuole | 62.84 | 61.16 |
| EER99240 | Sorghum | golgi | 58.26 | 57.99 |
| HORVU5Hr1G081610.1 | Barley | golgi, nucleus, plastid | 62.39 | 51.71 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 45.87 | 49.75 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 38.07 | 41.09 |
| Os05t0367900-01 | Rice | plastid | 45.41 | 38.08 |
| KRH68967 | Soybean | extracellular, plasma membrane | 33.03 | 36.55 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 32.11 | 35.53 |
| Os11t0157200-03 | Rice | plasma membrane | 31.19 | 32.38 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 32.11 | 31.67 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 32.57 | 31.14 |
| CDX91852 | Canola | cytosol, peroxisome, plasma membrane | 32.57 | 31.0 |
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 32.57 | 30.74 |
| Bra037412.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 32.57 | 30.74 |
| CDY07145 | Canola | cytosol, peroxisome, plasma membrane | 32.57 | 30.6 |
| Os12t0159600-01 | Rice | plastid | 29.36 | 30.19 |
| AT4G01410.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 31.19 | 29.96 |
| Bra000927.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.19 | 29.69 |
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 31.19 | 29.69 |
| KRH47782 | Soybean | cytosol | 33.03 | 28.92 |
| Os02t0538700-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 29.36 | 28.57 |
| KRH06353 | Soybean | cytosol | 32.11 | 28.34 |
| Os04t0416700-01 | Rice | golgi, plasma membrane | 27.52 | 27.27 |
| Os02t0100600-01 | Rice | endoplasmic reticulum, golgi, nucleus | 26.61 | 27.1 |
| Os04t0685400-01 | Rice | golgi, plasma membrane, plastid | 25.69 | 25.45 |
| Os08t0102700-01 | Rice | cytosol, peroxisome, plasma membrane | 25.69 | 24.67 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4347673 | ProteinID:BAD46021.1 | ProteinID:BAD46268.1 | ProteinID:BAF25673.2 | ProteinID:BAT09111.1 |
| GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046658 | EnsemblPlantsGene:Os09g0532200 | EnsemblPlants:Os09t0532200-00 | PANTHER:PTHR31415 |
| PANTHER:PTHR31415:SF9 | UniProt:Q652J9 | TMHMM:TMhelix | UniParc:UPI00003FF3E4 | RefSeq:XP_015611683.1 | SEG:seg |
Description
Hypothetical conserved gene. (Os09t0532200-00)
Coordinates
chr9:-:20880888..20881570
Molecular Weight (calculated)
22797.7 Da
IEP (calculated)
10.133
GRAVY (calculated)
0.284
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVSRKARFC EAHHRARRFR HLATAALAVA ALAAAAAAAL VLYLVYRPVM PQASVPRAAV YRLALANASS SAHALAASVQ FTLVLHNPSD RASLLYDGLV
101: AYASYRGEPV MPPAPLPPVA QDRGADVAMS PLLGGAAVPV SPDAARALAA DCAARRVQLR LVVMGRVKYR SGPFRSGWRD LYVRCNVVVG LSTEAAVAGG
201: GGGGDVPLLE YPRCAVDA
101: AYASYRGEPV MPPAPLPPVA QDRGADVAMS PLLGGAAVPV SPDAARALAA DCAARRVQLR LVVMGRVKYR SGPFRSGWRD LYVRCNVVVG LSTEAAVAGG
201: GGGGDVPLLE YPRCAVDA
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.