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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 2
  • vacuole 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 84.29 83.1
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 83.81 82.63
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 83.33 82.16
Os12t0159600-01 Rice plastid 82.86 82.08
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 82.38 81.22
Zm00001d052776_P001 Maize extracellular 78.57 77.46
EES08013 Sorghum golgi, plasma membrane, plastid 78.57 77.1
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 27.62 60.42
GSMUA_Achr9P08960_001 Banana plasma membrane 56.67 56.67
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 52.86 49.55
Os04t0416700-01 Rice golgi, plasma membrane 51.9 49.55
PGSC0003DMT400015090 Potato plasma membrane 48.1 48.56
Solyc06g074040.1.1 Tomato plasma membrane 48.1 48.56
PGSC0003DMT400050538 Potato plasma membrane 48.1 48.33
Bra002396.1-P Field mustard plasma membrane 47.62 48.31
CDY29084 Canola mitochondrion 39.05 47.67
Solyc11g068890.1.1 Tomato plasma membrane 47.14 47.37
CDX92375 Canola plasma membrane 46.67 47.34
CDX90600 Canola plasma membrane 46.67 47.12
CDY69198 Canola cytosol 46.67 47.12
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 46.19 46.86
CDX98590 Canola plasma membrane 46.19 46.86
Bra012801.1-P Field mustard plasma membrane 46.19 46.63
Bra006927.1-P Field mustard cytosol 46.19 46.63
VIT_06s0080g01200.t01 Wine grape plasma membrane 46.19 46.63
CDY68967 Canola cytosol 46.19 46.63
CDY69513 Canola plasma membrane 45.71 46.6
Bra035001.1-P Field mustard plasma membrane 45.71 46.6
CDY72430 Canola cytosol 45.71 46.15
CDY08687 Canola plasma membrane 45.24 46.12
Os04t0685400-01 Rice golgi, plasma membrane, plastid 48.1 45.91
AT3G52470.1 Thale cress extracellular, plasma membrane 45.24 45.67
Bra033428.1-P Field mustard cytosol 45.24 45.67
AT5G22200.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 45.24 45.24
AT3G44220.1 Thale cress plasma membrane 44.29 45.15
AT3G11660.1 Thale cress plasma membrane 43.81 44.02
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 43.81 43.81
Os08t0102700-01 Rice cytosol, peroxisome, plasma membrane 47.14 43.61
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 43.81 43.4
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 43.81 43.4
CDY35671 Canola plasma membrane 42.86 43.06
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 43.81 42.99
CDY01043 Canola mitochondrion 43.33 42.92
AT5G06330.1 Thale cress plasma membrane 41.9 42.51
PGSC0003DMT400042351 Potato extracellular, plasma membrane 42.38 42.18
PGSC0003DMT400072342 Potato extracellular, plasma membrane 42.38 42.18
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 42.38 42.18
KRG96252 Soybean plasma membrane 41.9 41.9
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 42.38 41.78
CDY09123 Canola plasma membrane 41.43 41.63
CDY32068 Canola plasma membrane 40.48 41.26
Bra038671.1-P Field mustard plasma membrane 41.43 41.23
CDY40419 Canola plasma membrane 40.48 40.87
Bra017276.1-P Field mustard plasma membrane 40.48 40.87
Bra020177.1-P Field mustard plasma membrane 40.48 40.67
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 40.48 40.28
KRH32836 Soybean plasma membrane 40.0 40.19
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 40.0 39.81
KRH72197 Soybean plasma membrane 39.05 39.61
KRH26671 Soybean plasma membrane 41.43 39.37
KRH22643 Soybean plasma membrane 40.48 38.99
CDX81001 Canola plastid 37.14 36.28
CDY55755 Canola plasma membrane 36.19 35.68
KRH67997 Soybean plastid 42.38 35.32
Bra005892.1-P Field mustard plasma membrane 35.71 35.21
AT5G05657.1 Thale cress plastid 22.38 34.31
CDX95339 Canola plasma membrane 44.29 31.21
Os09t0532200-00 Rice plastid 32.38 31.19
Os02t0100600-01 Rice endoplasmic reticulum, golgi, nucleus 30.0 29.44
Os05t0367900-01 Rice plastid 31.9 25.77
Protein Annotations
MapMan:35.1EntrezGene:4349828ProteinID:AAX92937.1ProteinID:ABA91552.1EMBL:AK070326EMBL:AK104217
EMBL:AK104466EMBL:AK104479EMBL:AK106091EMBL:AK119781ProteinID:BAF27644.1ProteinID:BAT12768.1
GO:GO:0003674GO:GO:0004871GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009506GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0046658InterPro:LEA_2EnsemblPlantsGene:Os11g0157200EnsemblPlants:Os11t0157200-03
PFAM:PF03168PANTHER:PTHR31415PANTHER:PTHR31415:SF11UniProt:Q53NC9TMHMM:TMhelixUniParc:UPI00005089C6
RefSeq:XP_015617040.1SEG:seg::::
Description
Harpin-induced 1 domain containing protein. (Os11t0157200-03)
Coordinates
chr11:-:2738439..2739463
Molecular Weight (calculated)
23039.7 Da
IEP (calculated)
7.957
GRAVY (calculated)
0.150
Length
210 amino acids
Sequence
(BLAST)
001: MGKDCGNHGD DDIRQACRRL LTILFGLALI VAIIALIVYL VLRPTHPRFF LQDATLRQLD LSNSSTSGVL STALQVTVAS RNPNDRVGVY YDRLDVYASY
101: KYQQITLAAS LPPVYQGHGD VDVWSPVLSG PDVPFAPYLG DALAKDVAAE YLILQVKIDG RVRWKVGSWI SGHYHLFVTC PAFFIASGGN GYPGANGLKF
201: QTATYCRVEV
Best Arabidopsis Sequence Match ( AT3G44220.1 )
(BLAST)
001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV
Arabidopsis Description
At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.