Factsheet for PGSC0003DMT400042351

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 1
extracellular 3
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	94.31	94.31
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	78.67	78.67
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	57.35	58.45
KRG96252	Soybean	plasma membrane	56.87	57.14
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	56.87	56.6
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	56.87	56.6
AT3G11660.1	Thale cress	plasma membrane	55.92	56.46
Bra038671.1-P	Field mustard	plasma membrane	56.4	56.4
CDY01043	Canola	mitochondrion	56.4	56.13
CDY29084	Canola	mitochondrion	45.02	55.23
Bra006927.1-P	Field mustard	cytosol	53.55	54.33
Bra012801.1-P	Field mustard	plasma membrane	53.55	54.33
CDX90600	Canola	plasma membrane	53.55	54.33
KRH72197	Soybean	plasma membrane	53.08	54.11
CDY69198	Canola	cytosol	53.08	53.85
PGSC0003DMT400015090	Potato	plasma membrane	53.08	53.85
CDY72430	Canola	cytosol	53.08	53.85
CDY68967	Canola	cytosol	53.08	53.85
Bra033428.1-P	Field mustard	cytosol	52.61	53.37
AT3G52470.1	Thale cress	extracellular, plasma membrane	52.13	52.88
KRH32836	Soybean	plasma membrane	52.13	52.63
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	52.13	52.38
PGSC0003DMT400050538	Potato	plasma membrane	51.66	52.15
AT5G06330.1	Thale cress	plasma membrane	50.71	51.69
CDY32068	Canola	plasma membrane	49.76	50.97
CDY40419	Canola	plasma membrane	48.82	49.52
Bra017276.1-P	Field mustard	plasma membrane	48.82	49.52
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	47.39	47.39
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	46.92	46.92
GSMUA_Achr6P35580_001	Banana	cytosol, extracellular, plastid	21.33	46.88
KRH67997	Soybean	plastid	55.45	46.43
GSMUA_Achr9P08960_001	Banana	plasma membrane	44.55	44.76
TraesCS5D01G133400.1	Wheat	golgi, plasma membrane, plastid	44.08	44.71
TraesCS5B01G125000.1	Wheat	cytosol, extracellular, plasma membrane	36.97	44.57
AT5G05657.1	Thale cress	plastid	28.91	44.53
TraesCS5A01G125800.1	Wheat	golgi, plasma membrane, plastid	43.6	44.23
TraesCS5B01G124900.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	43.13	43.75
CDX81001	Canola	plastid	44.55	43.72
CDY55755	Canola	plasma membrane	43.6	43.19
TraesCS7B01G227800.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	44.08	43.06
HORVU7Hr1G078320.1	Barley	cytosol	44.08	43.06
GSMUA_Achr7P03290_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.13	42.72
Bra005892.1-P	Field mustard	plasma membrane	43.13	42.72
TraesCS7A01G327200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	43.6	42.59
TraesCS7D01G323900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	43.6	42.59
Os11t0157200-03	Rice	plasma membrane	42.18	42.38
TraesCS5D01G133300.1	Wheat	cytosol	41.71	42.31
EES16682	Sorghum	golgi, plasma membrane, plastid	42.65	42.06
GSMUA_Achr9P29670_001	Banana	cytosol, extracellular, mitochondrion, plasma membrane	35.07	42.05
Os12t0159600-01	Rice	plastid	42.18	41.98
GSMUA_Achr8P34450_001	Banana	plasma membrane	41.23	41.63
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane, plastid	42.18	41.59
TraesCS4B01G115700.1	Wheat	peroxisome, plasma membrane, plastid	41.71	41.31
Os08t0102700-01	Rice	cytosol, peroxisome, plasma membrane	44.08	40.97
HORVU4Hr1G021190.1	Barley	golgi, plasma membrane, plastid	41.23	40.85
TraesCS4A01G199700.1	Wheat	golgi, plasma membrane, plastid	41.23	40.85
TraesCS4D01G113300.1	Wheat	peroxisome, plasma membrane, plastid	41.23	40.85
GSMUA_Achr6P19500_001	Banana	endoplasmic reticulum, plasma membrane	40.28	40.28
GSMUA_Achr10P...	Banana	plasma membrane	40.28	40.28
Zm00001d041927_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	40.28	40.09
TraesCS2B01G603000.1	Wheat	cytosol, golgi, plasma membrane	41.71	39.82
Zm00001d052776_P001	Maize	extracellular	39.81	39.44
TraesCS2A01G583600.1	Wheat	cytosol, golgi, plasma membrane	41.23	39.37
Zm00001d034977_P001	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	39.81	39.25
TraesCS2D01G596200.1	Wheat	cytosol, golgi, plasma membrane	40.76	38.91
Zm00001d026664_P001	Maize	extracellular	40.76	38.91
EES13132	Sorghum	cytosol	40.28	38.81
EES14353	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	39.34	38.78
EES08013	Sorghum	golgi, plasma membrane, plastid	39.34	38.78
Zm00001d023468_P001	Maize	extracellular	38.86	38.5
HORVU2Hr1G123370.1	Barley	cytosol, golgi, plasma membrane	39.34	37.73
Os04t0685400-01	Rice	golgi, plasma membrane, plastid	38.86	37.27
GSMUA_Achr11P...	Banana	cytosol, extracellular, mitochondrion, peroxisome	31.28	36.87
CDX95339	Canola	plasma membrane	51.66	36.58
TraesCS5A01G125600.1	Wheat	cytosol, peroxisome, plasma membrane	37.91	35.87
Zm00001d016733_P001	Maize	extracellular, plasma membrane	31.75	35.64
TraesCS2D01G210700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	35.55	34.88
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	35.07	34.74
TraesCS2B01G232700.1	Wheat	endoplasmic reticulum, golgi, plasma membrane	35.07	34.42
TraesCS2A01G205300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.07	34.42
Os04t0416700-01	Rice	golgi, plasma membrane	35.55	34.09
HORVU5Hr1G040160.3	Barley	golgi, peroxisome	44.08	34.07
EES06921	Sorghum	endoplasmic reticulum	34.12	33.96
EES12138	Sorghum	extracellular, golgi, plasma membrane	35.55	33.94
HORVU2Hr1G073830.1	Barley	extracellular, plasma membrane	33.65	32.87
HORVU5Hr1G114220.1	Barley	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	33.65	32.87
TraesCS5D01G498400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	33.18	32.71
Zm00001d003751_P001	Maize	extracellular, golgi, plasma membrane	34.6	32.44
TraesCS2D01G295700.1	Wheat	extracellular, plasma membrane	33.18	32.41
TraesCS2B01G313900.1	Wheat	extracellular, plasma membrane	33.18	32.41
TraesCS2A01G297700.1	Wheat	extracellular, plasma membrane	33.18	32.41
TraesCS5B01G498200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.7	32.24
TraesCS5A01G484900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	32.7	32.24
Os02t0538700-01	Rice	cytosol, endoplasmic reticulum, plasma membrane	34.12	32.14
HORVU2Hr1G040910.1	Barley	peroxisome	35.55	31.51
Zm00001d025371_P001	Maize	extracellular, golgi, plasma membrane	33.18	31.25
PGSC0003DMT400029400	Potato	cytosol, peroxisome, plastid, vacuole	29.38	27.19
HORVU2Hr1G066420.1	Barley	mitochondrion, plastid	24.17	25.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400042351	EnsemblPlantsGene:PGSC0003DMG400016420	EntrezGene:102581750	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF2	PFAM:PF03168	PGSC:PGSC0003DMG400016420	RefSeq:XP_006348478.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002953FEC	UniProt:M1BCW4	MapMan:35.1	:

Description

VAMP protein SEC22 [Source:PGSC_GENE;Acc:PGSC0003DMG400016420]

Coordinates

chr1:+:3224345..3225328

Molecular Weight (calculated)

23917.0 Da

IEP (calculated)

9.728

GRAVY (calculated)

-0.132

Length

211 amino acids

Sequence
(BLAST)

001: MSDKKCSHHK SKKKKLIRRC CAGFLIFLFL ALLTILIVWA ILQPKKPRFI LQDTTIFTFN VSAPNIFSTS IQTTIYARNP NSKIGIYYDN MDIYAMYHNQ
101: QITYYTQIPP VYQGHKDVNI WSPFVYGNNI PIAPYNGPGL SEDQQNGGVW LDFKIDGRVK WKVGSVTTGH YHLHVTCSAY VPLGDRPGYG GIMVGNNAIK
201: YQLARDCSVS V

Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)

001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV

Arabidopsis Description

NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.