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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • endoplasmic reticulum 3
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:nucleus, secretory
BaCelLo:nucleus
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
PProwler:secretory
WoLF PSORT:endoplasmic reticulum
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d016733_P001 Maize extracellular, plasma membrane 82.55 93.09
TraesCS5B01G498200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 76.89 76.17
TraesCS5D01G498400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 75.94 75.23
TraesCS5A01G484900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 75.47 74.77
TraesCS2D01G210700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 75.47 74.42
TraesCS2B01G232700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 75.47 74.42
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 78.3 74.11
TraesCS2A01G205300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 74.53 73.49
HORVU5Hr1G114220.1 Barley endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 74.06 72.69
HORVU2Hr1G040910.1 Barley peroxisome 78.3 69.75
EES12138 Sorghum extracellular, golgi, plasma membrane 64.15 61.54
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 24.53 54.17
EES16682 Sorghum golgi, plasma membrane, plastid 52.83 52.34
EES08013 Sorghum golgi, plasma membrane, plastid 49.06 48.6
GSMUA_Achr9P08960_001 Banana plasma membrane 46.7 47.14
VIT_06s0080g01200.t01 Wine grape plasma membrane 43.4 44.23
CDY29084 Canola mitochondrion 35.38 43.6
Bra002396.1-P Field mustard plasma membrane 42.45 43.48
CDX92375 Canola plasma membrane 42.45 43.48
PGSC0003DMT400015090 Potato plasma membrane 42.45 43.27
AT5G22200.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 42.45 42.86
Solyc06g074040.1.1 Tomato plasma membrane 41.98 42.79
Bra035001.1-P Field mustard plasma membrane 41.51 42.72
CDY08687 Canola plasma membrane 41.51 42.72
AT3G44220.1 Thale cress plasma membrane 41.51 42.72
CDY69513 Canola plasma membrane 41.51 42.72
CDX98590 Canola plasma membrane 41.51 42.51
EES13132 Sorghum cytosol 43.4 42.01
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 40.09 41.06
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 41.04 40.85
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 41.04 40.65
KRG96252 Soybean plasma membrane 39.62 40.0
AT3G11660.1 Thale cress plasma membrane 39.15 39.71
AT5G06330.1 Thale cress plasma membrane 38.68 39.61
CDX90600 Canola plasma membrane 38.68 39.42
KRH32836 Soybean plasma membrane 38.68 39.23
CDY09123 Canola plasma membrane 38.68 39.23
Solyc11g068890.1.1 Tomato plasma membrane 38.68 39.23
PGSC0003DMT400050538 Potato plasma membrane 38.68 39.23
Bra012801.1-P Field mustard plasma membrane 38.21 38.94
KRH26671 Soybean plasma membrane 40.57 38.91
Bra038671.1-P Field mustard plasma membrane 38.68 38.86
Bra020177.1-P Field mustard plasma membrane 38.21 38.76
CDY69198 Canola cytosol 37.74 38.46
CDY68967 Canola cytosol 37.74 38.46
Bra006927.1-P Field mustard cytosol 37.74 38.46
CDY35671 Canola plasma membrane 37.74 38.28
CDY72430 Canola cytosol 37.26 37.98
AT3G52470.1 Thale cress extracellular, plasma membrane 37.26 37.98
CDY32068 Canola plasma membrane 36.79 37.86
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 38.21 37.85
KRH72197 Soybean plasma membrane 36.79 37.68
KRH22643 Soybean plasma membrane 38.68 37.61
Bra033428.1-P Field mustard cytosol 36.79 37.5
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 37.26 37.26
CDY40419 Canola plasma membrane 36.32 37.02
Bra017276.1-P Field mustard plasma membrane 36.32 37.02
CDY01043 Canola mitochondrion 36.79 36.79
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 36.79 36.79
Bra005892.1-P Field mustard plasma membrane 36.32 36.15
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 35.38 35.71
CDY55755 Canola plasma membrane 35.85 35.68
CDX81001 Canola plastid 35.85 35.35
AT5G05657.1 Thale cress plastid 22.17 34.31
PGSC0003DMT400042351 Potato extracellular, plasma membrane 33.96 34.12
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 33.96 34.12
PGSC0003DMT400072342 Potato extracellular, plasma membrane 33.02 33.18
KRH67997 Soybean plastid 39.15 32.94
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 32.55 32.7
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 31.6 31.75
EER99240 Sorghum golgi 29.25 28.31
CDX95339 Canola plasma membrane 35.85 25.5
OQU84133 Sorghum endoplasmic reticulum, golgi, nucleus 24.06 21.98
OQU77870 Sorghum plastid 28.77 19.12
Protein Annotations
MapMan:35.1EntrezGene:8061025UniProt:C5XU17EnsemblPlants:EES06921ProteinID:EES06921ProteinID:EES06921.1
GO:GO:0003674GO:GO:0004871GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009506GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0046658InterPro:LEA_2PFAM:PF03168PANTHER:PTHR31415
PANTHER:PTHR31415:SF15EnsemblPlantsGene:SORBI_3004G168700unigene:Sbi.7677TMHMM:TMhelixUniParc:UPI0001A85BC6RefSeq:XP_002453945.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:51949746..51951465
Molecular Weight (calculated)
22981.8 Da
IEP (calculated)
8.792
GRAVY (calculated)
0.175
Length
212 amino acids
Sequence
(BLAST)
001: MSKDDKHHRH EHHLRRCCGC MASCLLALVL VVAFVALVIY LALRPSKPSF YLQDLQLRRP ISLGDPSLTA SAQVTLASRN PNEHVGIFYK RLDVFVTYQN
101: EAVTVPVSLP PQYQGHRDVT VWSPVLSAES VPVAGYVADA LKQDVHAGFV ALQVKVDGRV KWKVGSWVSG SYHLFVSCPA VLSAGYPGVV GGGNNTVSSL
201: KFAQPTGCAV EV
Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)
001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
Arabidopsis Description
NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.