Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- extracellular 1
- golgi 2
- plasma membrane 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G026690.1 | Barley | nucleus | 52.59 | 58.65 |
| TraesCS6B01G383000.1 | Wheat | endoplasmic reticulum | 51.29 | 58.33 |
| TraesCS6A01G349800.1 | Wheat | endoplasmic reticulum | 51.29 | 58.33 |
| HORVU6Hr1G083970.1 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 51.29 | 58.33 |
| TraesCS5D01G110800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 50.86 | 57.28 |
| TraesCS5B01G103800.1 | Wheat | cytosol | 51.72 | 57.14 |
| TraesCS5A01G098600.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 50.86 | 56.19 |
| TraesCS7D01G429700.1 | Wheat | endoplasmic reticulum | 46.55 | 53.2 |
| Os02t0100600-01 | Rice | endoplasmic reticulum, golgi, nucleus | 48.71 | 52.8 |
| TraesCS7D01G429800.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 45.26 | 51.98 |
| TraesCS7A01G440300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 45.26 | 51.98 |
| TraesCS6D01G332300.1 | Wheat | plastid | 51.29 | 46.67 |
| GSMUA_Achr4P18020_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 26.72 | 29.52 |
| GSMUA_Achr5P14440_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane, plastid | 25.86 | 28.85 |
| VIT_16s0098g00890.t01 | Wine grape | plasma membrane | 25.43 | 28.1 |
| EES16682 | Sorghum | golgi, plasma membrane, plastid | 25.86 | 28.04 |
| Solyc03g081230.1.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 25.43 | 27.7 |
| PGSC0003DMT400001571 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 25.0 | 27.23 |
| EES08013 | Sorghum | golgi, plasma membrane, plastid | 25.0 | 27.1 |
| EES13132 | Sorghum | cytosol | 25.43 | 26.94 |
| KRH64295 | Soybean | plasma membrane | 24.14 | 26.67 |
| EES14353 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 24.57 | 26.64 |
| CDY51789 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 22.84 | 24.88 |
| CDY28821 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 22.84 | 24.88 |
| CDY20226 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 22.84 | 24.88 |
| CDY14357 | Canola | plastid | 22.84 | 24.88 |
| Bra022668.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 22.84 | 24.88 |
| Bra003039.1-P | Field mustard | plastid | 22.84 | 24.88 |
| AT5G53730.1 | Thale cress | plastid | 22.41 | 24.41 |
| EES06921 | Sorghum | endoplasmic reticulum | 21.98 | 24.06 |
| KRH53632 | Soybean | plasma membrane | 21.55 | 22.42 |
| EES12138 | Sorghum | extracellular, golgi, plasma membrane | 20.26 | 21.27 |
| EER99240 | Sorghum | golgi | 18.53 | 19.63 |
| OQU77870 | Sorghum | plastid | 21.55 | 15.67 |
Protein Annotations
| EnsemblPlants:OQU84133 | EnsemblPlantsGene:SORBI_3004G000601 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR31415 |
| PANTHER:PTHR31415:SF20 | ProteinID:OQU84133 | ProteinID:OQU84133.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B424746 |
| UniProt:A0A1Z5RK70 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:65949..67099
Molecular Weight (calculated)
24486.0 Da
IEP (calculated)
9.437
GRAVY (calculated)
-0.098
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLITGDPED SPRDCSRSSS RPHKHHHHHH HGNRRRRRAI IAVSSTAASL LSLALILWLT LRPSSPSFSL LAATATVSNA SAAPIITVDA ALTAHNPNAH
101: ATALYDQLQA TASYAGVPLS GAAPLMPTPL EQPEGDVVLS AMLTSSSAWT WTSTSPSPPD RALLRVRIQG QLRWKVAAWV SATHGLTVDC IAAVLLQASA
201: IPLPPGQGQL QQQGASFPSQ SQSQSQCATN VQ
101: ATALYDQLQA TASYAGVPLS GAAPLMPTPL EQPEGDVVLS AMLTSSSAWT WTSTSPSPPD RALLRVRIQG QLRWKVAAWV SATHGLTVDC IAAVLLQASA
201: IPLPPGQGQL QQQGASFPSQ SQSQSQCATN VQ
001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV
Arabidopsis Description
At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.