Factsheet for TraesCS6A01G349800.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, peroxisome
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	95.59	95.59
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	95.1	95.1
TraesCS6D01G332300.1	Wheat	plastid	99.02	79.22
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	75.49	73.33
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	68.14	68.81
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	55.88	53.27
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	58.33	51.29
VIT_16s0098g00890.t01	Wine grape	plasma membrane	30.39	29.52
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	29.9	29.33
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	29.9	28.64
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	29.9	28.64
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	29.41	28.57
TraesCS5A01G125800.1	Wheat	golgi, plasma membrane, plastid	28.43	27.88
KRH64295	Soybean	plasma membrane	28.43	27.62
TraesCS7A01G327200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	28.92	27.31
TraesCS4A01G199700.1	Wheat	golgi, plasma membrane, plastid	27.94	26.76
AT5G53730.1	Thale cress	plastid	26.96	25.82
Bra003039.1-P	Field mustard	plastid	26.47	25.35
CDY14357	Canola	plastid	26.47	25.35
CDY20226	Canola	endoplasmic reticulum, nucleus, plasma membrane	26.47	25.35
TraesCS2A01G583600.1	Wheat	cytosol, golgi, plasma membrane	26.96	24.89
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	25.98	24.88
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	25.98	24.88
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	25.98	24.88
TraesCS5A01G125600.1	Wheat	cytosol, peroxisome, plasma membrane	25.49	23.32
KRH53632	Soybean	plasma membrane	25.49	23.32
TraesCS5A01G320200.1	Wheat	cytosol, peroxisome, vacuole	25.49	23.11
TraesCS5A01G484900.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	22.06	21.03
TraesCS2A01G205300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.06	20.93
TraesCS2A01G297700.1	Wheat	extracellular, plasma membrane	20.59	19.44
TraesCS1A01G232200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	22.55	18.11

Protein Annotations

EnsemblPlants:TraesCS6A01G349800.1	EnsemblPlantsGene:TraesCS6A01G349800	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6A:+:581965272..581965886

Molecular Weight (calculated)

21216.4 Da

IEP (calculated)

11.171

GRAVY (calculated)

0.189

Length

204 amino acids

Sequence
(BLAST)

001: MSRITDDPEH SPRDCATKHR HHHSAGRRRL LIGALSAAAS LLALAIILWL TLRPSSPRFT LLAATATAPN ATAGGIVRLD AAFVAHNPNA RAAALYDRLQ
101: ARASYAGVQL AATAPLPPFQ QAQGDAVLTA SLSASSAAAS AAETAESGRT TLLLRLRVEG QLRWKVSAWV SGSRALAAEC VAVVVPSQLT AVVVQGSQCA
201: TTLQ

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.