Factsheet for PGSC0003DMT400001571

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
plasma membrane 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	98.12	98.12
VIT_16s0098g00890.t01	Wine grape	plasma membrane	66.67	67.62
KRH64295	Soybean	plasma membrane	63.38	64.29
CDY20226	Canola	endoplasmic reticulum, nucleus, plasma membrane	59.62	59.62
Bra003039.1-P	Field mustard	plastid	59.15	59.15
CDY14357	Canola	plastid	59.15	59.15
AT5G53730.1	Thale cress	plastid	58.22	58.22
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	57.28	57.28
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	57.28	57.28
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	57.28	57.28
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	54.93	56.25
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	53.05	53.81
KRH53632	Soybean	plasma membrane	54.93	52.47
PGSC0003DMT400015090	Potato	plasma membrane	41.31	42.31
PGSC0003DMT400050538	Potato	plasma membrane	37.09	37.8
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	34.74	35.07
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	34.27	34.6
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	28.64	29.9
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	28.64	29.9
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	28.64	29.9
HORVU5Hr1G026690.1	Barley	nucleus	28.17	28.85
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.7	28.64
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	27.23	28.57
TraesCS5B01G103800.1	Wheat	cytosol	28.17	28.57
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	26.76	28.22
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.7	28.1
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	26.29	27.72
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	27.7	27.57
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	27.23	25.0
TraesCS6D01G332300.1	Wheat	plastid	29.11	24.31
PGSC0003DMT400029400	Potato	cytosol, peroxisome, plastid, vacuole	25.35	23.68

Protein Annotations

EnsemblPlants:PGSC0003DMT400001571	EnsemblPlantsGene:PGSC0003DMG400000583	EntrezGene:102589328	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	PFAM:PF03168	PGSC:PGSC0003DMG400000583	RefSeq:XP_006347517.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002961B53	UniProt:M0ZIQ2	MapMan:35.1	:

Description

NDR1/HIN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400000583]

Coordinates

chr3:-:47430096..47430988

Molecular Weight (calculated)

23998.2 Da

IEP (calculated)

9.773

GRAVY (calculated)

-0.098

Length

213 amino acids

Sequence
(BLAST)

001: MSPIDVKSPK HCEEKGFKVE NLFPKKKLFF CFSTISLSIL SFIFLLYLTL HPTKPNFTLR EADIYQLNLS GPRQLLNSSI QLTLVSKNPN KKVGIYYDEL
101: QVFASYKGQQ ITLHTSLPPF YQGHEDSNFL SALLIGNGLP VDPYFGYEVQ RDQSVGKLIM NLKGSGRLRW KVGTWVSGKY RFNVDCVAIM PFGSSLPSAP
201: LSFRQGAQCS TTL

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.