CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 1
mitochondrion 1
endoplasmic reticulum 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14357	Canola	plastid	98.12	98.12
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	92.49	92.49
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	92.49	92.49
AT5G53730.1	Thale cress	plastid	87.79	87.79
VIT_16s0098g00890.t01	Wine grape	plasma membrane	61.5	62.38
KRH64295	Soybean	plasma membrane	61.03	61.9
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	59.62	59.62
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	59.15	59.15
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	51.64	52.88
KRH53632	Soybean	plasma membrane	54.46	52.02
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	50.7	51.43
CDY08687	Canola	plasma membrane	34.74	35.92
CDY69513	Canola	plasma membrane	34.74	35.92
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	34.27	34.43
CDY29084	Canola	mitochondrion	27.7	34.3
CDX92375	Canola	plasma membrane	33.33	34.3
CDY72430	Canola	cytosol	33.33	34.13
CDY01043	Canola	mitochondrion	33.8	33.96
CDX98590	Canola	plasma membrane	32.86	33.82
CDY68967	Canola	cytosol	32.86	33.65
CDY69198	Canola	cytosol	32.86	33.65
CDX90600	Canola	plasma membrane	32.86	33.65
CDY09123	Canola	plasma membrane	32.39	33.01
CDY32068	Canola	plasma membrane	31.92	33.01
CDY40419	Canola	plasma membrane	31.92	32.69
CDY35671	Canola	plasma membrane	31.92	32.54
CDX81001	Canola	plastid	31.46	31.16
CDY55755	Canola	plasma membrane	30.99	30.99
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	26.29	27.45
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	25.82	26.96
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	25.35	26.47
HORVU5Hr1G026690.1	Barley	nucleus	25.82	26.44
TraesCS5B01G103800.1	Wheat	cytosol	25.82	26.19
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.82	26.19
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	24.88	25.73
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	24.41	25.62
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	25.35	25.23
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	23.47	24.75
CDY51712	Canola	cytosol, peroxisome, plasma membrane	26.76	24.68
CDY07145	Canola	cytosol, peroxisome, plasma membrane	26.76	24.57
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.54	23.76
CDX91852	Canola	cytosol, peroxisome, plasma membrane	25.35	23.58
CDX74380	Canola	cytosol, peroxisome, plasma membrane	25.35	23.58
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	24.88	22.84
CDX95339	Canola	plasma membrane	31.92	22.82
TraesCS6D01G332300.1	Wheat	plastid	26.29	21.96

Protein Annotations

EnsemblPlants:CDY20226	EnsemblPlantsGene:GSBRNA2T00010140001	GO:A0A078G4A7	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	PFAM:PF03168	ProteinID:CDY20226	ProteinID:CDY20226.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF2812	UniProt:A0A078G4A7	MapMan:35.1	:

Description

BnaC09g30130DBnaC09g30130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4A7]

Coordinates

chrLK032104:+:437225..437866

Molecular Weight (calculated)

23727.8 Da

IEP (calculated)

9.690

GRAVY (calculated)

0.063

Length

213 amino acids

Sequence
(BLAST)

001: MSQISETSPK HCAKKGGINI NNRRKKLFFT FSTFFSGLLL IIFLIWLTLH PAKPEFSLTE ADIYTLNLSS SATHLLNSSI QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGNELP VAQSFGYQIV RDRAAGKVII GMKMDGKLRW KIGTFVSGAY RFNVNCVAIV AFDPNMTTDP
201: LAIIQGTGCS TDI

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.