Factsheet for Solyc03g081230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plasma membrane 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	98.12	98.12
VIT_16s0098g00890.t01	Wine grape	plasma membrane	67.61	68.57
KRH64295	Soybean	plasma membrane	64.79	65.71
CDY20226	Canola	endoplasmic reticulum, nucleus, plasma membrane	59.15	59.15
CDY14357	Canola	plastid	58.69	58.69
Bra003039.1-P	Field mustard	plastid	58.69	58.69
AT5G53730.1	Thale cress	plastid	57.28	57.28
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	55.4	56.73
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	56.34	56.34
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	56.34	56.34
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	56.34	56.34
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	53.99	54.76
KRH53632	Soybean	plasma membrane	55.4	52.91
Solyc06g074040.1.1	Tomato	plasma membrane	41.78	42.79
Solyc11g068890.1.1	Tomato	plasma membrane	37.09	37.8
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	35.68	36.02
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	28.64	29.9
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	28.64	29.9
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	28.64	29.9
HORVU5Hr1G026690.1	Barley	nucleus	28.17	28.85
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.7	28.64
TraesCS5B01G103800.1	Wheat	cytosol	28.17	28.57
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	27.23	28.57
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	26.76	28.22
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.7	28.1
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	26.29	27.72
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	27.7	27.57
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	27.7	25.43
Solyc10g005040.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	25.82	24.89
TraesCS6D01G332300.1	Wheat	plastid	29.11	24.31

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009506
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0046658	UniProt:K4BI00	InterPro:LEA_2
PFAM:PF03168	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	EnsemblPlantsGene:Solyc03g081230.1	EnsemblPlants:Solyc03g081230.1.1	TMHMM:TMhelix
UniParc:UPI000276836C	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:52127093..52127734

Molecular Weight (calculated)

23992.2 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.075

Length

213 amino acids

Sequence
(BLAST)

001: MSPIDVKSPK HCEEKGFKVE KLFPKKKLFF CFSTISLSIL SFIFLLYLTL HPTKPNFTLR EADIYQLNLS GPRQLLNSSI QLTLVSKNPN KKVGIYYDEL
101: QVFASYKGQQ ITLHTSLPPF YQGHEDSNFL SALLIGNGLP VDPYFGYEVQ RDQIVGKLIV NLKGSGRLRW KVGTWVSGKY RFNVDCVAIM PFGSSLPSGP
201: LSFRQGAQCS TTL

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.