Factsheet for Bra003039.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14357	Canola	plastid	100.0	100.0
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	92.02	92.02
AT5G53730.1	Thale cress	plastid	87.32	87.32
VIT_16s0098g00890.t01	Wine grape	plasma membrane	61.03	61.9
KRH64295	Soybean	plasma membrane	60.56	61.43
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	59.15	59.15
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	58.69	58.69
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	51.64	52.88
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	50.7	51.43
KRH53632	Soybean	plasma membrane	53.52	51.12
Bra038671.1-P	Field mustard	plasma membrane	35.68	36.02
Bra035001.1-P	Field mustard	plasma membrane	34.27	35.44
Bra012801.1-P	Field mustard	plasma membrane	33.8	34.62
Bra033428.1-P	Field mustard	cytosol	33.8	34.62
Bra006927.1-P	Field mustard	cytosol	33.8	34.62
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	34.27	34.43
Bra002396.1-P	Field mustard	plasma membrane	33.33	34.3
Bra017276.1-P	Field mustard	plasma membrane	31.92	32.69
Bra020177.1-P	Field mustard	plasma membrane	31.46	32.06
Bra005892.1-P	Field mustard	plasma membrane	30.99	30.99
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	26.29	27.45
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	25.82	26.96
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	25.35	26.47
HORVU5Hr1G026690.1	Barley	nucleus	25.82	26.44
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.82	26.19
TraesCS5B01G103800.1	Wheat	cytosol	25.82	26.19
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	24.88	25.73
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	25.82	25.7
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	24.41	25.62
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	23.47	24.75
Bra037412.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.76	24.68
Bra000927.1-P	Field mustard	cytosol, peroxisome, plasma membrane	25.82	24.02
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	22.07	23.27
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	24.88	22.84
TraesCS6D01G332300.1	Wheat	plastid	26.29	21.96

Protein Annotations

EnsemblPlants:Bra003039.1	EnsemblPlants:Bra003039.1-P	EnsemblPlantsGene:Bra003039	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	PFAM:PF03168	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002543CCC	UniProt:M4CFQ7	MapMan:35.1	:	:	:

Description

AT5G53730 (E=4e-091) | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein

Coordinates

chrA10:-:5828829..5829470

Molecular Weight (calculated)

23688.8 Da

IEP (calculated)

9.959

GRAVY (calculated)

0.031

Length

213 amino acids

Sequence
(BLAST)

001: MSQISETSPK HCAKKGGINI NNRRKKLFFT FSTFFSGLLL IIFLIWLTLR PAKPEFSLTE ADIYTLNLSS SATHLLNSSI QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TSFLQGNELP VAQSFGYQIV RDRAAGKVII GMKMDGKLRW KIGTFVSGAY RFNVNCVAIV AFGPNMTTDP
201: LAPIQGTGCS TDI

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.