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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 3
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:plasma membrane
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51712 Canola cytosol, peroxisome, plasma membrane 100.0 100.0
AT4G01410.1 Thale cress endoplasmic reticulum, peroxisome, plasma membrane 88.74 90.31
Bra000927.1-P Field mustard cytosol, peroxisome, plasma membrane 87.45 88.21
KRG97253 Soybean endoplasmic reticulum, extracellular, plasma membrane 46.75 54.82
KRH68967 Soybean extracellular, plasma membrane 46.75 54.82
VIT_15s0048g02530.t01 Wine grape plasma membrane 47.62 54.46
GSMUA_AchrUn_... Banana golgi, plasma membrane 41.56 47.76
Solyc10g005040.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 43.72 45.7
PGSC0003DMT400029400 Potato cytosol, peroxisome, plastid, vacuole 42.42 42.98
KRH06353 Soybean cytosol 41.56 38.87
KRH47782 Soybean cytosol 41.56 38.55
TraesCS1A01G232200.1 Wheat cytosol, endoplasmic reticulum, peroxisome 39.39 35.83
TraesCS1B01G245500.1 Wheat cytosol 38.96 35.57
Os05t0367900-01 Rice plastid 39.39 35.0
HORVU1Hr1G058400.1 Barley cytosol, endoplasmic reticulum, peroxisome 38.96 34.35
TraesCS5A01G320200.1 Wheat cytosol, peroxisome, vacuole 32.47 33.33
TraesCS5B01G320400.1 Wheat cytosol, plasma membrane, vacuole 32.47 33.33
TraesCS5D01G326100.1 Wheat cytosol, plasma membrane, vacuole 32.03 33.04
TraesCS1D01G233500.1 Wheat peroxisome 38.96 32.73
Os09t0532200-00 Rice plastid 30.74 32.57
Zm00001d037915_P001 Maize cytosol, peroxisome, plastid 36.36 32.06
Zm00001d021289_P001 Maize mitochondrion 30.3 31.96
EER99240 Sorghum golgi 29.87 31.51
Bra038671.1-P Field mustard plasma membrane 27.27 29.86
Bra035001.1-P Field mustard plasma membrane 25.54 28.64
HORVU5Hr1G081610.1 Barley golgi, nucleus, plastid 31.6 27.76
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 25.11 27.36
OQU77870 Sorghum plastid 37.66 27.27
Bra002396.1-P Field mustard plasma membrane 24.24 27.05
Bra012801.1-P Field mustard plasma membrane 24.24 26.92
Bra006927.1-P Field mustard cytosol 24.24 26.92
Bra003039.1-P Field mustard plastid 24.68 26.76
Bra033428.1-P Field mustard cytosol 23.81 26.44
Bra017276.1-P Field mustard plasma membrane 23.81 26.44
Bra022668.1-P Field mustard endoplasmic reticulum, nucleus, plasma membrane 23.81 25.82
Bra005892.1-P Field mustard plasma membrane 21.64 23.47
Bra020177.1-P Field mustard plasma membrane 21.21 23.45
Protein Annotations
EnsemblPlants:Bra037412.1EnsemblPlants:Bra037412.1-PEnsemblPlantsGene:Bra037412GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31415PANTHER:PTHR31415:SF9PFAM:PF03168SEG:segTMHMM:TMhelix
UniParc:UPI0002542084UniProt:M4F8K0MapMan:35.1:::
Description
AT4G01410 (E=1e-082) | harpin-induced family protein / HIN1 family protein / harpin-responsive family protein
Coordinates
chrA09:-:651008..651703
Molecular Weight (calculated)
24685.1 Da
IEP (calculated)
9.873
GRAVY (calculated)
0.034
Length
231 amino acids
Sequence
(BLAST)
001: MGEGEAKAEQ AAKADHKNAP SASSTPESYS KDSEGGGGGG GGDALRAICG AVFTILVLLG IIALILWLVY RPHKPRLTVV GAAIYDLNFT TPPLISTSVQ
101: FSVMARNPNR RVSIRYDKLS MYVTYRDQII TPPLPLPPLR MGHKSTVVIA PVLGGDGIPV SPEVANGLKS DEANGAVMMR VVVLGRLRWK AGAIKTGRYG
201: FYATCDVWMR FDRSSNGQVP LLAPSTCKVD V
Best Arabidopsis Sequence Match ( AT4G01410.1 )
(BLAST)
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.