Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07145 | Canola | cytosol, peroxisome, plasma membrane | 90.75 | 88.79 |
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 90.31 | 88.74 |
| Bra037412.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 90.31 | 88.74 |
| CDX91852 | Canola | cytosol, peroxisome, plasma membrane | 88.99 | 88.21 |
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 88.99 | 88.21 |
| Bra000927.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 88.99 | 88.21 |
| KRH68967 | Soybean | extracellular, plasma membrane | 47.58 | 54.82 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 47.58 | 54.82 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 48.46 | 54.46 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 41.85 | 47.26 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 45.81 | 47.06 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 44.49 | 44.3 |
| KRH47782 | Soybean | cytosol | 42.73 | 38.96 |
| KRH06353 | Soybean | cytosol | 42.29 | 38.87 |
| TraesCS1A01G232200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 39.21 | 35.04 |
| TraesCS1B01G245500.1 | Wheat | cytosol | 38.77 | 34.78 |
| TraesCS5A01G320200.1 | Wheat | cytosol, peroxisome, vacuole | 33.92 | 34.22 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 38.77 | 33.59 |
| TraesCS5B01G320400.1 | Wheat | cytosol, plasma membrane, vacuole | 33.04 | 33.33 |
| Os05t0367900-01 | Rice | plastid | 37.89 | 33.08 |
| TraesCS5D01G326100.1 | Wheat | cytosol, plasma membrane, vacuole | 32.6 | 33.04 |
| TraesCS1D01G233500.1 | Wheat | peroxisome | 38.77 | 32.0 |
| Zm00001d021289_P001 | Maize | mitochondrion | 30.84 | 31.96 |
| Zm00001d037915_P001 | Maize | cytosol, peroxisome, plastid | 36.12 | 31.3 |
| Os09t0532200-00 | Rice | plastid | 29.96 | 31.19 |
| EER99240 | Sorghum | golgi | 29.52 | 30.59 |
| AT3G11660.1 | Thale cress | plasma membrane | 26.87 | 29.19 |
| HORVU5Hr1G081610.1 | Barley | golgi, nucleus, plastid | 33.04 | 28.52 |
| AT5G06330.1 | Thale cress | plasma membrane | 25.99 | 28.5 |
| AT3G44220.1 | Thale cress | plasma membrane | 25.55 | 28.16 |
| AT2G35960.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 25.55 | 27.62 |
| AT5G22200.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 25.55 | 27.62 |
| AT5G05657.1 | Thale cress | plastid | 16.3 | 27.01 |
| OQU77870 | Sorghum | plastid | 37.89 | 26.96 |
| AT3G52470.1 | Thale cress | extracellular, plasma membrane | 24.67 | 26.92 |
| AT2G35970.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 22.91 | 24.64 |
| AT4G09590.1 | Thale cress | cytosol, plasma membrane, vacuole | 22.47 | 24.17 |
| AT5G53730.1 | Thale cress | plastid | 22.47 | 23.94 |
Protein Annotations
| MapMan:35.1 | EntrezGene:828166 | ProteinID:AEE82022.1 | EMBL:AK118416 | ArrayExpress:AT4G01410 | EnsemblPlantsGene:AT4G01410 |
| RefSeq:AT4G01410 | TAIR:AT4G01410 | RefSeq:AT4G01410-TAIR-G | EnsemblPlants:AT4G01410.1 | TAIR:AT4G01410.1 | EMBL:AY086897 |
| EMBL:BT006216 | ProteinID:CAB80950.1 | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046658 | InterPro:LEA_2 |
| RefSeq:NP_192050.1 | PFAM:PF03168 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF9 | UniProt:Q9M132 | TMHMM:TMhelix |
| UniParc:UPI00000AC31A | SEG:seg | : | : | : | : |
Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
Coordinates
chr4:+:578028..579287
Molecular Weight (calculated)
24449.9 Da
IEP (calculated)
10.158
GRAVY (calculated)
0.072
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.