Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 97.84 | 98.27 |
| AT4G01410.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 88.79 | 90.75 |
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 87.5 | 88.65 |
| CDX91852 | Canola | cytosol, peroxisome, plasma membrane | 87.07 | 88.21 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.98 | 55.33 |
| KRH68967 | Soybean | extracellular, plasma membrane | 46.98 | 55.33 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 47.41 | 54.46 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 40.95 | 47.26 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 43.97 | 46.15 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 42.67 | 43.42 |
| KRH06353 | Soybean | cytosol | 41.38 | 38.87 |
| KRH47782 | Soybean | cytosol | 41.38 | 38.55 |
| TraesCS1A01G232200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 39.22 | 35.83 |
| TraesCS1B01G245500.1 | Wheat | cytosol | 38.79 | 35.57 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 38.79 | 34.35 |
| Os05t0367900-01 | Rice | plastid | 38.36 | 34.23 |
| TraesCS5B01G320400.1 | Wheat | cytosol, plasma membrane, vacuole | 32.33 | 33.33 |
| TraesCS5D01G326100.1 | Wheat | cytosol, plasma membrane, vacuole | 31.9 | 33.04 |
| TraesCS5A01G320200.1 | Wheat | cytosol, peroxisome, vacuole | 31.9 | 32.89 |
| TraesCS1D01G233500.1 | Wheat | peroxisome | 38.79 | 32.73 |
| Os09t0532200-00 | Rice | plastid | 30.6 | 32.57 |
| Zm00001d021289_P001 | Maize | mitochondrion | 30.17 | 31.96 |
| Zm00001d037915_P001 | Maize | cytosol, peroxisome, plastid | 35.78 | 31.68 |
| EER99240 | Sorghum | golgi | 29.74 | 31.51 |
| CDY01043 | Canola | mitochondrion | 25.86 | 28.3 |
| CDY08506 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.86 | 28.3 |
| CDY69513 | Canola | plasma membrane | 25.0 | 28.16 |
| CDY08687 | Canola | plasma membrane | 25.0 | 28.16 |
| CDX92375 | Canola | plasma membrane | 25.0 | 28.02 |
| CDY29084 | Canola | mitochondrion | 20.69 | 27.91 |
| HORVU5Hr1G081610.1 | Barley | golgi, nucleus, plastid | 31.47 | 27.76 |
| CDY14357 | Canola | plastid | 25.0 | 27.23 |
| CDX98590 | Canola | plasma membrane | 24.14 | 27.05 |
| OQU77870 | Sorghum | plastid | 37.07 | 26.96 |
| CDY20226 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 24.57 | 26.76 |
| CDY40419 | Canola | plasma membrane | 23.71 | 26.44 |
| CDY28821 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 24.14 | 26.29 |
| CDY51789 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 24.14 | 26.29 |
| CDY32068 | Canola | plasma membrane | 23.28 | 26.21 |
| CDY69198 | Canola | cytosol | 23.28 | 25.96 |
| CDX90600 | Canola | plasma membrane | 23.28 | 25.96 |
| CDY68967 | Canola | cytosol | 23.28 | 25.96 |
| CDY72430 | Canola | cytosol | 23.28 | 25.96 |
| CDY35671 | Canola | plasma membrane | 22.41 | 24.88 |
| CDY09123 | Canola | plasma membrane | 21.98 | 24.4 |
| CDY55755 | Canola | plasma membrane | 21.55 | 23.47 |
| CDX81001 | Canola | plastid | 21.12 | 22.79 |
| CDX95339 | Canola | plasma membrane | 21.98 | 17.11 |
Protein Annotations
| EnsemblPlants:CDY07145 | EnsemblPlantsGene:GSBRNA2T00123498001 | GO:A0A078EYH1 | InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF9 |
| PFAM:PF03168 | ProteinID:CDY07145 | ProteinID:CDY07145.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF14CD |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaCnng01600D
Coordinates
chrLK031975:-:500998..501919
Molecular Weight (calculated)
24755.2 Da
IEP (calculated)
10.106
GRAVY (calculated)
0.029
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGEAKAEK AAKADHKNAP SASSTPESYS KDSEGGGGGG GGGDALRAIC GAIFTILVLL GLIALILWLV YRPHKPRLTV VGAAIYDLNF TTPPLISTSV
101: QFSVMARNPN RRVSIRYDKL SMYVTYRDQI ITPPLPLPPL RMGHKSTVVI APVLGGDGIP VSPEVANGLK SDEANGAVMM RVVVLGRLRW KAGAIKTGRY
201: GFYATCDVWM RFNRSSNGQV PLLAPSTCKV DV
101: QFSVMARNPN RRVSIRYDKL SMYVTYRDQI ITPPLPLPPL RMGHKSTVVI APVLGGDGIP VSPEVANGLK SDEANGAVMM RVVVLGRLRW KAGAIKTGRY
201: GFYATCDVWM RFNRSSNGQV PLLAPSTCKV DV
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.