Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74380 | Canola | cytosol, peroxisome, plasma membrane | 97.38 | 97.38 |
| AT4G01410.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 88.21 | 88.99 |
| CDY07145 | Canola | cytosol, peroxisome, plasma membrane | 88.21 | 87.07 |
| CDY51712 | Canola | cytosol, peroxisome, plasma membrane | 87.77 | 87.01 |
| VIT_15s0048g02530.t01 | Wine grape | plasma membrane | 48.47 | 54.95 |
| KRH68967 | Soybean | extracellular, plasma membrane | 47.16 | 54.82 |
| KRG97253 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 46.72 | 54.31 |
| Solyc10g005040.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 46.29 | 47.96 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 41.48 | 47.26 |
| PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 44.54 | 44.74 |
| KRH06353 | Soybean | cytosol | 42.36 | 39.27 |
| KRH47782 | Soybean | cytosol | 42.36 | 38.96 |
| TraesCS1A01G232200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 37.99 | 34.25 |
| TraesCS1B01G245500.1 | Wheat | cytosol | 37.12 | 33.6 |
| TraesCS5A01G320200.1 | Wheat | cytosol, peroxisome, vacuole | 32.75 | 33.33 |
| Zm00001d021289_P001 | Maize | mitochondrion | 31.44 | 32.88 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 37.55 | 32.82 |
| TraesCS5D01G326100.1 | Wheat | cytosol, plasma membrane, vacuole | 31.88 | 32.59 |
| Os09t0532200-00 | Rice | plastid | 31.0 | 32.57 |
| TraesCS5B01G320400.1 | Wheat | cytosol, plasma membrane, vacuole | 31.88 | 32.44 |
| Os05t0367900-01 | Rice | plastid | 36.68 | 32.31 |
| TraesCS1D01G233500.1 | Wheat | peroxisome | 37.55 | 31.27 |
| EER99240 | Sorghum | golgi | 29.26 | 30.59 |
| Zm00001d037915_P001 | Maize | cytosol, peroxisome, plastid | 34.06 | 29.77 |
| CDY08687 | Canola | plasma membrane | 25.33 | 28.16 |
| HORVU5Hr1G081610.1 | Barley | golgi, nucleus, plastid | 32.31 | 28.14 |
| CDX92375 | Canola | plasma membrane | 25.33 | 28.02 |
| CDY29084 | Canola | mitochondrion | 20.96 | 27.91 |
| CDY69513 | Canola | plasma membrane | 24.89 | 27.67 |
| CDY08506 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 25.33 | 27.36 |
| CDY01043 | Canola | mitochondrion | 25.33 | 27.36 |
| CDX98590 | Canola | plasma membrane | 24.45 | 27.05 |
| CDY72430 | Canola | cytosol | 24.45 | 26.92 |
| CDY40419 | Canola | plasma membrane | 24.02 | 26.44 |
| CDX90600 | Canola | plasma membrane | 24.02 | 26.44 |
| CDY32068 | Canola | plasma membrane | 23.58 | 26.21 |
| CDY68967 | Canola | cytosol | 23.58 | 25.96 |
| CDY69198 | Canola | cytosol | 23.58 | 25.96 |
| CDY14357 | Canola | plastid | 24.02 | 25.82 |
| CDY20226 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 23.58 | 25.35 |
| OQU77870 | Sorghum | plastid | 34.93 | 25.08 |
| CDY28821 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 23.14 | 24.88 |
| CDY51789 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 23.14 | 24.88 |
| CDY55755 | Canola | plasma membrane | 22.27 | 23.94 |
| CDY35671 | Canola | plasma membrane | 21.83 | 23.92 |
| CDX81001 | Canola | plastid | 22.27 | 23.72 |
| CDY09123 | Canola | plasma membrane | 21.4 | 23.45 |
| CDX95339 | Canola | plasma membrane | 23.14 | 17.79 |
Protein Annotations
| EnsemblPlants:CDX91852 | EnsemblPlantsGene:GSBRNA2T00153468001 | GO:A0A078DSH1 | InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF9 |
| PFAM:PF03168 | ProteinID:CDX91852 | ProteinID:CDX91852.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EB0DBE |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC03g31540D
Coordinates
chrLK031870:-:406851..407771
Molecular Weight (calculated)
25005.5 Da
IEP (calculated)
10.411
GRAVY (calculated)
0.009
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEGEAKAEH AAKADHKHAP SASSTPESYS KDGERRRRGR DAYRAFCAAI FSILVLLGII ALILWLVYRP HKPRLTVVGA AIYDLNFTAP PLISTSVQFS
101: VLARNPNRRV SIHYDKLSMY VTYKDQIITP PLQLPPLRLG HKSTVVIAPV LGGAGVPVSP EVANGLKSDE AYGLVSMRVV VTGRLRWKAG AIMTGRYGFY
201: ATCGVWMRFN RSSNGQVPLL APSTCKVDV
101: VLARNPNRRV SIHYDKLSMY VTYKDQIITP PLQLPPLRLG HKSTVVIAPV LGGAGVPVSP EVANGLKSDE AYGLVSMRVV VTGRLRWKAG AIMTGRYGFY
201: ATCGVWMRFN RSSNGQVPLL APSTCKVDV
001: MGEGEAKAEH AAKADHKNAP SASSTPESYS KEGGGGGGDA RRAICGAIFT ILVILGIIAL ILWLVYRPHK PRLTVVGAAI YDLNFTAPPL ISTSVQFSVL
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
101: ARNPNRRVSI HYDKLSMYVT YKDQIITPPL PLPPLRLGHK STVVIAPVMG GNGIPVSPEV ANGLKNDEAY GVVLMRVVIF GRLRWKAGAI KTGRYGFYAR
201: CDVWLRFNPS SNGQVPLLAP STCKVDV
Arabidopsis Description
At4g01410 [Source:UniProtKB/TrEMBL;Acc:Q9M132]
SUBAcon: [plasma membrane,endoplasmic reticulum,peroxisome]
SUBAcon: [plasma membrane,endoplasmic reticulum,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.