Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- endoplasmic reticulum 2
- plastid 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P14440_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane, plastid | 85.71 | 86.54 |
| VIT_16s0098g00890.t01 | Wine grape | plasma membrane | 59.05 | 59.05 |
| Solyc03g081230.1.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 54.76 | 53.99 |
| KRH64295 | Soybean | plasma membrane | 53.33 | 53.33 |
| PGSC0003DMT400001571 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 53.81 | 53.05 |
| Bra003039.1-P | Field mustard | plastid | 51.43 | 50.7 |
| CDY14357 | Canola | plastid | 51.43 | 50.7 |
| CDY20226 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 51.43 | 50.7 |
| CDY51789 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 50.95 | 50.23 |
| Bra022668.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 50.95 | 50.23 |
| CDY28821 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 50.95 | 50.23 |
| AT5G53730.1 | Thale cress | plastid | 49.05 | 48.36 |
| KRH53632 | Soybean | plasma membrane | 47.62 | 44.84 |
| GSMUA_Achr9P08960_001 | Banana | plasma membrane | 43.33 | 43.33 |
| GSMUA_Achr6P19500_001 | Banana | endoplasmic reticulum, plasma membrane | 42.86 | 42.65 |
| GSMUA_Achr8P34450_001 | Banana | plasma membrane | 40.48 | 40.67 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 40.95 | 40.19 |
| GSMUA_Achr6P35580_001 | Banana | cytosol, extracellular, plastid | 18.1 | 39.58 |
| GSMUA_Achr7P03290_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 39.52 | 38.97 |
| GSMUA_Achr10P... | Banana | plasma membrane | 38.1 | 37.91 |
| GSMUA_Achr9P29670_001 | Banana | cytosol, extracellular, mitochondrion, plasma membrane | 31.43 | 37.5 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, mitochondrion, peroxisome | 30.48 | 35.75 |
| Os02t0100600-01 | Rice | endoplasmic reticulum, golgi, nucleus | 32.86 | 32.24 |
| HORVU6Hr1G083970.1 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 29.52 | 30.39 |
| TraesCS6B01G383000.1 | Wheat | endoplasmic reticulum | 29.52 | 30.39 |
| TraesCS6A01G349800.1 | Wheat | endoplasmic reticulum | 28.57 | 29.41 |
| TraesCS5D01G110800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.1 | 28.64 |
| TraesCS5B01G103800.1 | Wheat | cytosol | 28.57 | 28.57 |
| HORVU5Hr1G026690.1 | Barley | nucleus | 28.1 | 28.37 |
| TraesCS5A01G098600.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.1 | 28.1 |
| GSMUA_AchrUn_... | Banana | golgi, plasma membrane | 26.67 | 27.86 |
| TraesCS7D01G429700.1 | Wheat | endoplasmic reticulum | 26.67 | 27.59 |
| TraesCS7A01G440300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 26.19 | 27.23 |
| TraesCS7D01G429800.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane, plastid | 26.19 | 27.23 |
| OQU84133 | Sorghum | endoplasmic reticulum, golgi, nucleus | 29.52 | 26.72 |
| TraesCS6D01G332300.1 | Wheat | plastid | 30.0 | 24.71 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P18020_001 | EnsemblPlants:GSMUA_Achr4T18020_001 | EnsemblPlantsGene:GSMUA_Achr4G18020_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF20 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002952351 | UniProt:M0SPW5 | MapMan:35.1 | : | : | : |
Description
Putative harpin-induced protein 1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G18020_001]
Coordinates
chr4:-:18561928..18562560
Molecular Weight (calculated)
23249.2 Da
IEP (calculated)
9.559
GRAVY (calculated)
0.023
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLVTTSPK DCSKKGFHLN KPNKKILYSL FSLLVSILSV VFLIWLVLHP TKPEFYLRDT AVYELSLASP RLLNSTIQAT VVSKNPNSHV GIYYDRLRAY
101: AAYKGQQITG DSELPPFYQG HQDINILSSS LYGIAMPVAP SFGYHVSRDQ TAGRLYLEVK LDGKLRWKVG SWVSGSYRID VDCVAVIVPR PGADPGPMSL
201: VQGTHCSTTV
101: AAYKGQQITG DSELPPFYQG HQDINILSSS LYGIAMPVAP SFGYHVSRDQ TAGRLYLEVK LDGKLRWKVG SWVSGSYRID VDCVAVIVPR PGADPGPMSL
201: VQGTHCSTTV
001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI
Arabidopsis Description
NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.