Factsheet for VIT_16s0098g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64295	Soybean	plasma membrane	74.29	74.29
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	68.57	67.61
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	67.62	66.67
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	62.86	61.97
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	62.86	61.97
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	62.86	61.97
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	60.95	61.54
CDY20226	Canola	endoplasmic reticulum, nucleus, plasma membrane	62.38	61.5
AT5G53730.1	Thale cress	plastid	62.38	61.5
CDY14357	Canola	plastid	61.9	61.03
Bra003039.1-P	Field mustard	plastid	61.9	61.03
KRH53632	Soybean	plasma membrane	63.81	60.09
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	59.05	59.05
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	43.33	43.96
VIT_06s0080g01200.t01	Wine grape	plasma membrane	34.76	35.1
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	30.0	30.88
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	30.0	30.88
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	29.52	30.39
TraesCS5A01G098600.1	Wheat	cytosol, endoplasmic reticulum, nucleus	29.52	29.52
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	30.0	29.44
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	28.57	29.13
HORVU5Hr1G026690.1	Barley	nucleus	28.57	28.85
TraesCS5B01G103800.1	Wheat	cytosol	28.57	28.57
VIT_15s0048g02530.t01	Wine grape	plasma membrane	26.67	27.72
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	26.19	27.09
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	25.71	26.73
TraesCS7A01G440300.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	24.76	25.74
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	28.1	25.43
TraesCS6D01G332300.1	Wheat	plastid	30.48	25.1

Protein Annotations

EntrezGene:100233032	wikigene:100233032	MapMan:35.1	ProteinID:ABU43058	ProteinID:ABU43058.1	ProteinID:CCB48095
ProteinID:CCB48095.1	EMBL:EF551158	UniProt:F6H772	EMBL:FN595247	GO:GO:0003674	GO:GO:0004871
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009506	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0046658	InterPro:LEA_2	EntrezGene:LOC100233032	wikigene:LOC100233032	PFAM:PF03168	PANTHER:PTHR31415
PANTHER:PTHR31415:SF20	TIGR:TC56454	TMHMM:TMhelix	UniParc:UPI00015CB565	ArrayExpress:VIT_16s0098g00890	EnsemblPlantsGene:VIT_16s0098g00890
EnsemblPlants:VIT_16s0098g00890.t01	unigene:Vvi.1259	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:21228114..21228963

Molecular Weight (calculated)

23183.1 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.012

Length

210 amino acids

Sequence
(BLAST)

001: MSKVDSKSPK HCADKGLNID KFYKKLYWSG FTFLFSVLSL ILLVWLILHP TKPEFSLKEA DIYQLNLSGP HLLNSSIQLT LLSKNPNTKV GIYYDMVQVY
101: ASYKGQQITV DTSLPPFYQG HEESNLLTAS LVGTALPVAP SFGYEVGRDQ TAGKLVLSLK LDGRVRWKVG TWVSGRYRLN VNCVAVMAFG PSIPSGPLSS
201: KEGTQCSTTV

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.