Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G110800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 90.38 | 91.26 |
| TraesCS5B01G103800.1 | Wheat | cytosol | 91.83 | 90.95 |
| TraesCS5A01G098600.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 91.35 | 90.48 |
| HORVU6Hr1G083970.1 | Barley | endoplasmic reticulum, peroxisome, plasma membrane | 72.6 | 74.02 |
| OQU84133 | Sorghum | endoplasmic reticulum, golgi, nucleus | 58.65 | 52.59 |
| Os02t0100600-01 | Rice | endoplasmic reticulum, golgi, nucleus | 50.96 | 49.53 |
| GSMUA_Achr5P14440_001 | Banana | cytosol, endoplasmic reticulum, plasma membrane, plastid | 28.85 | 28.85 |
| VIT_16s0098g00890.t01 | Wine grape | plasma membrane | 28.85 | 28.57 |
| Solyc03g081230.1.1 | Tomato | endoplasmic reticulum, nucleus, plasma membrane | 28.85 | 28.17 |
| PGSC0003DMT400001571 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 28.85 | 28.17 |
| HORVU4Hr1G021190.1 | Barley | golgi, plasma membrane, plastid | 28.85 | 28.17 |
| GSMUA_Achr4P18020_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 28.37 | 28.1 |
| HORVU7Hr1G078320.1 | Barley | cytosol | 28.37 | 27.31 |
| KRH64295 | Soybean | plasma membrane | 26.44 | 26.19 |
| Bra003039.1-P | Field mustard | plastid | 26.44 | 25.82 |
| CDY20226 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 26.44 | 25.82 |
| CDY14357 | Canola | plastid | 26.44 | 25.82 |
| AT5G53730.1 | Thale cress | plastid | 25.48 | 24.88 |
| CDY51789 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 25.0 | 24.41 |
| CDY28821 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 25.0 | 24.41 |
| Bra022668.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 25.0 | 24.41 |
| HORVU2Hr1G123370.1 | Barley | cytosol, golgi, plasma membrane | 25.48 | 24.09 |
| KRH53632 | Soybean | plasma membrane | 25.0 | 23.32 |
| HORVU5Hr1G040160.3 | Barley | golgi, peroxisome | 29.81 | 22.71 |
| HORVU5Hr1G114220.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 22.6 | 21.76 |
| HORVU2Hr1G073830.1 | Barley | extracellular, plasma membrane | 21.15 | 20.37 |
| HORVU2Hr1G040910.1 | Barley | peroxisome | 21.63 | 18.91 |
| HORVU5Hr1G081610.1 | Barley | golgi, nucleus, plastid | 22.6 | 17.87 |
| HORVU1Hr1G058400.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 20.67 | 16.41 |
| HORVU2Hr1G066420.1 | Barley | mitochondrion, plastid | 14.42 | 15.08 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G026690.1 | EnsemblPlantsGene:HORVU5Hr1G026690 | InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF20 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000295007A | UniProt:M0VIJ5 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr5H:+:151947184..151948282
Molecular Weight (calculated)
22000.4 Da
IEP (calculated)
10.788
GRAVY (calculated)
0.035
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLITDDPDR SPRDCATKRH HHHHHHSGGW RRRRLLIAAS SGAASLLALC MILWLTLRPS APRFTLLAAT ATPSNASTGG GLVRLDAALM AHNPNARAAA
101: LYDGLRARAS YADFQLATAG PLPPFQQAQG DAVLSASLTS AAEASAEEAA DGRSPALLRL RIEGRLRWKV AAWVSGGRTL AAVCVAVVAP SQLRTFVVQG
201: TQCAITIE
101: LYDGLRARAS YADFQLATAG PLPPFQQAQG DAVLSASLTS AAEASAEEAA DGRSPALLRL RIEGRLRWKV AAWVSGGRTL AAVCVAVVAP SQLRTFVVQG
201: TQCAITIE
001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI
Arabidopsis Description
NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.