Factsheet for TraesCS6D01G332300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, plasma membrane, plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G349800.1	Wheat	endoplasmic reticulum	79.22	99.02
TraesCS6B01G383000.1	Wheat	endoplasmic reticulum	76.47	95.59
HORVU6Hr1G083970.1	Barley	endoplasmic reticulum, peroxisome, plasma membrane	76.08	95.1
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.61	73.79
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	53.73	67.82
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	53.73	67.49
Os02t0100600-01	Rice	endoplasmic reticulum, golgi, nucleus	44.71	53.27
OQU84133	Sorghum	endoplasmic reticulum, golgi, nucleus	46.67	51.29
VIT_16s0098g00890.t01	Wine grape	plasma membrane	25.1	30.48
GSMUA_Achr5P14440_001	Banana	cytosol, endoplasmic reticulum, plasma membrane, plastid	24.71	30.29
GSMUA_Achr4P18020_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	24.71	30.0
PGSC0003DMT400001571	Potato	endoplasmic reticulum, nucleus, plasma membrane	24.31	29.11
Solyc03g081230.1.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	24.31	29.11
KRH64295	Soybean	plasma membrane	23.53	28.57
TraesCS7D01G323900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	23.92	28.24
TraesCS5D01G133400.1	Wheat	golgi, plasma membrane, plastid	22.75	27.88
TraesCS5D01G133300.1	Wheat	cytosol	22.75	27.88
TraesCS4D01G113300.1	Wheat	peroxisome, plasma membrane, plastid	22.75	27.23
Bra003039.1-P	Field mustard	plastid	21.96	26.29
CDY20226	Canola	endoplasmic reticulum, nucleus, plasma membrane	21.96	26.29
CDY14357	Canola	plastid	21.96	26.29
AT5G53730.1	Thale cress	plastid	21.96	26.29
CDY51789	Canola	endoplasmic reticulum, nucleus, plasma membrane	21.57	25.82
CDY28821	Canola	endoplasmic reticulum, nucleus, plasma membrane	21.57	25.82
Bra022668.1-P	Field mustard	endoplasmic reticulum, nucleus, plasma membrane	21.57	25.82
TraesCS2D01G596200.1	Wheat	cytosol, golgi, plasma membrane	22.35	25.79
TraesCS5D01G326100.1	Wheat	cytosol, plasma membrane, vacuole	21.57	24.55
KRH53632	Soybean	plasma membrane	21.18	24.22
TraesCS5D01G498400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	18.04	21.5
TraesCS2D01G295700.1	Wheat	extracellular, plasma membrane	16.47	19.44
TraesCS2D01G210700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	16.08	19.07
TraesCS1D01G233500.1	Wheat	peroxisome	18.82	17.45

Protein Annotations

EnsemblPlants:TraesCS6D01G332300.1	EnsemblPlantsGene:TraesCS6D01G332300	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF20	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6D:+:434604301..434605068

Molecular Weight (calculated)

26812.4 Da

IEP (calculated)

10.655

GRAVY (calculated)

0.267

Length

255 amino acids

Sequence
(BLAST)

001: MFTKSQSLLV VISTTTNYNQ IKYILGVLPT NIISAHTHHL SLSLLLCTTM SRITDDPEHS PRDCATKHRH HHSAGRRRLL IGALSAAASL LALAIILWLT
101: LRPSSPRFTL LAATATATAP NATAGGIVRL DAAFVAHNPN ARAAALYDRL QARASYAGVQ LAATAPLPPF QQAQGDAVLT ASLSASSAAA SAAETAEAGR
201: TTLLLRLRVE GQLRWKVSAW VSGNRALAAE CVAVVVPSQL TAVVVQGSQC ATTLQ

Best Arabidopsis Sequence Match ( AT5G53730.1 )
(BLAST)

001: MSQISITSPK HCAKKGGINI NNRHKKLFFT FSTFFSGLLL IIFLVWLILH PERPEFSLTE ADIYSLNLTT SSTHLLNSSV QLTLFSKNPN KKVGIYYDKL
101: LVYAAYRGQQ ITSEASLPPF YQSHEEINLL TAFLQGTELP VAQSFGYQIS RERSTGKIII GMKMDGKLRW KIGTWVSGAY RFNVNCLAIV AFGMNMTTPP
201: LASLQGTRCS TTI

Arabidopsis Description

NHL26NHL26 [Source:UniProtKB/TrEMBL;Acc:A0A178UFX4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.