Factsheet for TraesCS4D01G113300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, plastid
Any Predictor:	peroxisome, plastid, secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G199700.1	Wheat	golgi, plasma membrane, plastid	98.59	98.59
TraesCS4B01G115700.1	Wheat	peroxisome, plasma membrane, plastid	97.65	97.65
HORVU4Hr1G021190.1	Barley	golgi, plasma membrane, plastid	95.77	95.77
Os11t0157200-03	Rice	plasma membrane	81.22	82.38
TraesCS5D01G133400.1	Wheat	golgi, plasma membrane, plastid	77.93	79.81
EES08013	Sorghum	golgi, plasma membrane, plastid	75.59	75.23
TraesCS5D01G133300.1	Wheat	cytosol	72.77	74.52
Zm00001d052776_P001	Maize	extracellular	74.18	74.18
GSMUA_Achr6P35580_001	Banana	cytosol, extracellular, plastid	27.7	61.46
GSMUA_Achr9P08960_001	Banana	plasma membrane	56.81	57.62
TraesCS5D01G498400.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	53.05	52.8
TraesCS2D01G210700.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	51.17	50.7
TraesCS7D01G323900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	51.17	50.46
TraesCS2D01G596200.1	Wheat	cytosol, golgi, plasma membrane	51.17	49.32
CDY29084	Canola	mitochondrion	38.97	48.26
TraesCS2D01G295700.1	Wheat	extracellular, plasma membrane	48.83	48.15
PGSC0003DMT400015090	Potato	plasma membrane	46.48	47.6
Solyc06g074040.1.1	Tomato	plasma membrane	45.54	46.63
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	45.07	46.38
VIT_06s0080g01200.t01	Wine grape	plasma membrane	45.07	46.15
CDX90600	Canola	plasma membrane	45.07	46.15
PGSC0003DMT400050538	Potato	plasma membrane	45.07	45.93
Bra012801.1-P	Field mustard	plasma membrane	44.6	45.67
Bra006927.1-P	Field mustard	cytosol	44.6	45.67
Bra002396.1-P	Field mustard	plasma membrane	44.13	45.41
CDY69198	Canola	cytosol	44.13	45.19
CDY72430	Canola	cytosol	44.13	45.19
CDY08687	Canola	plasma membrane	43.66	45.15
Bra035001.1-P	Field mustard	plasma membrane	43.66	45.15
CDY69513	Canola	plasma membrane	43.66	45.15
Solyc11g068890.1.1	Tomato	plasma membrane	44.13	44.98
CDX98590	Canola	plasma membrane	43.66	44.93
CDX92375	Canola	plasma membrane	43.66	44.93
AT3G52470.1	Thale cress	extracellular, plasma membrane	43.66	44.71
Bra033428.1-P	Field mustard	cytosol	43.66	44.71
CDY68967	Canola	cytosol	43.66	44.71
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	43.66	44.29
AT3G44220.1	Thale cress	plasma membrane	42.72	44.17
AT5G06330.1	Thale cress	plasma membrane	42.25	43.48
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.72	42.52
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	41.78	42.38
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	41.78	41.98
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	41.31	41.51
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	41.31	41.31
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	40.85	41.23
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	40.85	41.23
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	40.85	41.23
AT3G11660.1	Thale cress	plasma membrane	40.38	41.15
CDY35671	Canola	plasma membrane	40.38	41.15
CDY01043	Canola	mitochondrion	40.85	41.04
Bra038671.1-P	Field mustard	plasma membrane	40.38	40.76
CDY32068	Canola	plasma membrane	38.97	40.29
KRH32836	Soybean	plasma membrane	39.44	40.19
CDY40419	Canola	plasma membrane	38.97	39.9
Bra017276.1-P	Field mustard	plasma membrane	38.97	39.9
CDY09123	Canola	plasma membrane	38.97	39.71
KRH72197	Soybean	plasma membrane	38.5	39.61
KRG96252	Soybean	plasma membrane	38.97	39.52
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	38.97	39.34
KRH26671	Soybean	plasma membrane	40.38	38.91
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	38.5	38.86
Bra020177.1-P	Field mustard	plasma membrane	38.03	38.76
KRH22643	Soybean	plasma membrane	38.97	38.07
CDX81001	Canola	plastid	36.15	35.81
AT5G05657.1	Thale cress	plastid	23.0	35.77
CDY55755	Canola	plasma membrane	35.21	35.21
Bra005892.1-P	Field mustard	plasma membrane	34.74	34.74
KRH67997	Soybean	plastid	39.44	33.33
TraesCS5D01G326100.1	Wheat	cytosol, plasma membrane, vacuole	32.86	31.25
CDX95339	Canola	plasma membrane	42.72	30.54
TraesCS5D01G110800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.7	28.64
TraesCS7D01G429700.1	Wheat	endoplasmic reticulum	24.88	26.11
TraesCS7D01G429800.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane, plastid	24.41	25.74
TraesCS1D01G233500.1	Wheat	peroxisome	31.46	24.36
TraesCS6D01G332300.1	Wheat	plastid	27.23	22.75

Protein Annotations

EnsemblPlants:TraesCS4D01G113300.1	EnsemblPlantsGene:TraesCS4D01G113300	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF11	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4D:+:93841197..93841838

Molecular Weight (calculated)

23247.0 Da

IEP (calculated)

8.579

GRAVY (calculated)

0.233

Length

213 amino acids

Sequence
(BLAST)

001: MSKDCGNHGE DDIRRTCRRF LAFLFFLALV VAVIALIVYL VLRPTHPRFY LQDASLRQLD VLSANASAAA GVLSTVLQVT VASRNPNDRV GVYYDRLDVY
101: ASYKYQQITL ASALPPVYQG HGDVEVWSPV LSGPNVPFAP YLADALAKDV QAGYLILQVK IDGRVRWKVG SWISGHYHIF ATCPAFLVGA GGNGAPGASG
201: LRFQTATYCH VEV

Best Arabidopsis Sequence Match ( AT2G35960.1 )
(BLAST)

001: MTTKDCGNHG GGGGGGTASR ICGVIIGFII IVLITIFLVW IILQPTKPRF ILQDATVYAF NLSQPNLLTS NFQITIASRN RNSRIGIYYD RLHVYATYRN
101: QQITLRTAIP PTYQGHKEDN VWSPFVYGNS VPIAPFNAVA LGDEQNRGFV TLIIRADGRV RWKVGTLITG KYHLHVRCQA FINLADKAAG VHVGENAVKY
201: MLINKCSVNV

Arabidopsis Description

NHL12NDR1/HIN1-like protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ54]
SUBAcon: [endoplasmic reticulum,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.