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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, plasma membrane

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • extracellular 3
  • plastid 1
  • golgi 2
  • plasma membrane 3
  • endoplasmic reticulum 2
  • vacuole 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400042351 Potato extracellular, plasma membrane 78.67 78.67
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 57.35 58.45
AT3G11660.1 Thale cress plasma membrane 57.35 57.89
Bra038671.1-P Field mustard plasma membrane 57.82 57.82
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 57.82 57.55
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 57.82 57.55
CDY01043 Canola mitochondrion 57.35 57.08
KRG96252 Soybean plasma membrane 56.4 56.67
PGSC0003DMT400015090 Potato plasma membrane 53.08 53.85
Bra006927.1-P Field mustard cytosol 53.08 53.85
CDY69198 Canola cytosol 52.61 53.37
CDY68967 Canola cytosol 52.61 53.37
Bra012801.1-P Field mustard plasma membrane 52.13 52.88
CDX90600 Canola plasma membrane 51.66 52.4
CDY72430 Canola cytosol 51.66 52.4
KRH72197 Soybean plasma membrane 51.18 52.17
KRH32836 Soybean plasma membrane 51.66 52.15
Bra033428.1-P Field mustard cytosol 51.18 51.92
AT3G52470.1 Thale cress extracellular, plasma membrane 51.18 51.92
CDY29084 Canola mitochondrion 42.18 51.74
PGSC0003DMT400050538 Potato plasma membrane 51.18 51.67
AT5G06330.1 Thale cress plasma membrane 49.76 50.72
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 50.24 50.48
KRH67997 Soybean plastid 57.82 48.41
CDY32068 Canola plasma membrane 46.45 47.57
CDY40419 Canola plasma membrane 45.5 46.15
Bra017276.1-P Field mustard plasma membrane 45.5 46.15
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 45.5 45.5
TraesCS5D01G133400.1 Wheat golgi, plasma membrane, plastid 44.55 45.19
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 45.02 45.02
TraesCS5A01G125800.1 Wheat golgi, plasma membrane, plastid 44.08 44.71
TraesCS5B01G125000.1 Wheat cytosol, extracellular, plasma membrane 36.97 44.57
CDY55755 Canola plasma membrane 44.55 44.13
GSMUA_Achr9P08960_001 Banana plasma membrane 43.6 43.81
TraesCS5B01G124900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 43.13 43.75
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 19.91 43.75
CDX81001 Canola plastid 44.55 43.72
Bra005892.1-P Field mustard plasma membrane 44.08 43.66
EES16682 Sorghum golgi, plasma membrane, plastid 43.13 42.52
Os11t0157200-03 Rice plasma membrane 42.18 42.38
AT5G05657.1 Thale cress plastid 27.49 42.34
GSMUA_Achr8P34450_001 Banana plasma membrane 41.71 42.11
GSMUA_AchrUn_... Banana cytosol, plasma membrane, plastid 42.65 42.06
TraesCS5D01G133300.1 Wheat cytosol 41.23 41.83
HORVU4Hr1G021190.1 Barley golgi, plasma membrane, plastid 41.71 41.31
TraesCS4B01G115700.1 Wheat peroxisome, plasma membrane, plastid 41.71 41.31
Os12t0159600-01 Rice plastid 41.23 41.04
GSMUA_Achr9P29670_001 Banana cytosol, extracellular, mitochondrion, plasma membrane 34.12 40.91
GSMUA_Achr7P03290_001 Banana endoplasmic reticulum, mitochondrion, plasma membrane, plastid 41.23 40.85
TraesCS4D01G113300.1 Wheat peroxisome, plasma membrane, plastid 41.23 40.85
Zm00001d041927_P001 Maize endoplasmic reticulum, golgi, plasma membrane 40.76 40.57
TraesCS4A01G199700.1 Wheat golgi, plasma membrane, plastid 40.76 40.38
Zm00001d052776_P001 Maize extracellular 40.28 39.91
HORVU7Hr1G078320.1 Barley cytosol 40.28 39.35
TraesCS7D01G323900.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 40.28 39.35
TraesCS7A01G327200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 40.28 39.35
GSMUA_Achr10P... Banana plasma membrane 39.34 39.34
TraesCS2B01G603000.1 Wheat cytosol, golgi, plasma membrane 40.76 38.91
TraesCS7B01G227800.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 39.81 38.89
EES13132 Sorghum cytosol 40.28 38.81
GSMUA_Achr11P... Banana cytosol, extracellular, mitochondrion, peroxisome 32.7 38.55
Zm00001d023468_P001 Maize extracellular 38.86 38.5
Zm00001d026664_P001 Maize extracellular 40.28 38.46
TraesCS2A01G583600.1 Wheat cytosol, golgi, plasma membrane 40.28 38.46
Zm00001d034977_P001 Maize cytosol, mitochondrion, peroxisome, plasma membrane 38.86 38.32
EES08013 Sorghum golgi, plasma membrane, plastid 38.86 38.32
Os04t0685400-01 Rice golgi, plasma membrane, plastid 39.81 38.18
TraesCS2D01G596200.1 Wheat cytosol, golgi, plasma membrane 39.81 38.01
GSMUA_Achr6P19500_001 Banana endoplasmic reticulum, plasma membrane 37.91 37.91
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 37.91 37.38
Os08t0102700-01 Rice cytosol, peroxisome, plasma membrane 39.81 37.0
HORVU2Hr1G123370.1 Barley cytosol, golgi, plasma membrane 38.39 36.82
TraesCS5A01G125600.1 Wheat cytosol, peroxisome, plasma membrane 38.39 36.32
CDX95339 Canola plasma membrane 50.71 35.91
Os04t0416700-01 Rice golgi, plasma membrane 36.97 35.45
TraesCS2B01G232700.1 Wheat endoplasmic reticulum, golgi, plasma membrane 36.02 35.35
TraesCS2A01G205300.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 36.02 35.35
EES12138 Sorghum extracellular, golgi, plasma membrane 36.97 35.29
TraesCS2D01G210700.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 35.55 34.88
PGSC0003DMT400001571 Potato endoplasmic reticulum, nucleus, plasma membrane 34.6 34.27
HORVU5Hr1G040160.3 Barley golgi, peroxisome 44.08 34.07
Zm00001d016733_P001 Maize extracellular, plasma membrane 30.33 34.04
Zm00001d003751_P001 Maize extracellular, golgi, plasma membrane 36.02 33.78
HORVU5Hr1G114220.1 Barley endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 34.12 33.33
TraesCS5A01G484900.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.65 33.18
TraesCS5B01G498200.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.65 33.18
TraesCS5D01G498400.1 Wheat endoplasmic reticulum, extracellular, plasma membrane 33.65 33.18
Os02t0538700-01 Rice cytosol, endoplasmic reticulum, plasma membrane 35.07 33.04
EES06921 Sorghum endoplasmic reticulum 33.18 33.02
HORVU2Hr1G073830.1 Barley extracellular, plasma membrane 33.65 32.87
Zm00001d025371_P001 Maize extracellular, golgi, plasma membrane 34.6 32.59
TraesCS2A01G297700.1 Wheat extracellular, plasma membrane 33.18 32.41
TraesCS2B01G313900.1 Wheat extracellular, plasma membrane 33.18 32.41
TraesCS2D01G295700.1 Wheat extracellular, plasma membrane 33.18 32.41
HORVU2Hr1G040910.1 Barley peroxisome 35.55 31.51
HORVU2Hr1G066420.1 Barley mitochondrion, plastid 23.22 24.62
PGSC0003DMT400029400 Potato cytosol, peroxisome, plastid, vacuole 26.07 24.12
Protein Annotations
EnsemblPlants:PGSC0003DMT400072342EnsemblPlantsGene:PGSC0003DMG400028151EntrezGene:102584448GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31415PANTHER:PTHR31415:SF2PFAM:PF03168PGSC:PGSC0003DMG400028151RefSeq:XP_006339162.1
SEG:segTMHMM:TMhelixUniParc:UPI000296CC43UniProt:M1CQ39MapMan:35.1:
Description
VAMP protein SEC22 [Source:PGSC_GENE;Acc:PGSC0003DMG400028151]
Coordinates
chr10:-:56090820..56091798
Molecular Weight (calculated)
24108.2 Da
IEP (calculated)
10.005
GRAVY (calculated)
-0.153
Length
211 amino acids
Sequence
(BLAST)
001: MSVKECTHHK DKKRKLVRRL FAGILIFLFV VLLTVLLVWA ILQPKKPRFI LQDATIFNFN VSAPNIFSTS IQITIYSRNP NDKIGVYYDK MKTYANYHKQ
101: QITYYTQIPS VYQGHKDVNI WSPFVFSNNV PISPLNGPDL KEDQQNGGVW LDFKIDGRVK WRVGTITTGH YHLHVTCTAY VPFGNHPGDG GLFVGNNAVK
201: YQLARSCDVS V
Best Arabidopsis Sequence Match ( AT3G11660.1 )
(BLAST)
001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
Arabidopsis Description
NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.