Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- extracellular 3
- plastid 1
- golgi 2
- plasma membrane 3
- endoplasmic reticulum 2
- vacuole 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400042351 | Potato | extracellular, plasma membrane | 78.67 | 78.67 |
VIT_08s0007g02350.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 57.35 | 58.45 |
AT3G11660.1 | Thale cress | plasma membrane | 57.35 | 57.89 |
Bra038671.1-P | Field mustard | plasma membrane | 57.82 | 57.82 |
CDY08506 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 57.82 | 57.55 |
Bra034822.1-P | Field mustard | extracellular, mitochondrion, plasma membrane, plastid | 57.82 | 57.55 |
CDY01043 | Canola | mitochondrion | 57.35 | 57.08 |
KRG96252 | Soybean | plasma membrane | 56.4 | 56.67 |
PGSC0003DMT400015090 | Potato | plasma membrane | 53.08 | 53.85 |
Bra006927.1-P | Field mustard | cytosol | 53.08 | 53.85 |
CDY69198 | Canola | cytosol | 52.61 | 53.37 |
CDY68967 | Canola | cytosol | 52.61 | 53.37 |
Bra012801.1-P | Field mustard | plasma membrane | 52.13 | 52.88 |
CDX90600 | Canola | plasma membrane | 51.66 | 52.4 |
CDY72430 | Canola | cytosol | 51.66 | 52.4 |
KRH72197 | Soybean | plasma membrane | 51.18 | 52.17 |
KRH32836 | Soybean | plasma membrane | 51.66 | 52.15 |
Bra033428.1-P | Field mustard | cytosol | 51.18 | 51.92 |
AT3G52470.1 | Thale cress | extracellular, plasma membrane | 51.18 | 51.92 |
CDY29084 | Canola | mitochondrion | 42.18 | 51.74 |
PGSC0003DMT400050538 | Potato | plasma membrane | 51.18 | 51.67 |
AT5G06330.1 | Thale cress | plasma membrane | 49.76 | 50.72 |
AT2G35960.1 | Thale cress | endoplasmic reticulum, golgi, plasma membrane | 50.24 | 50.48 |
KRH67997 | Soybean | plastid | 57.82 | 48.41 |
CDY32068 | Canola | plasma membrane | 46.45 | 47.57 |
CDY40419 | Canola | plasma membrane | 45.5 | 46.15 |
Bra017276.1-P | Field mustard | plasma membrane | 45.5 | 46.15 |
AT2G35970.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 45.5 | 45.5 |
TraesCS5D01G133400.1 | Wheat | golgi, plasma membrane, plastid | 44.55 | 45.19 |
AT4G09590.1 | Thale cress | cytosol, plasma membrane, vacuole | 45.02 | 45.02 |
TraesCS5A01G125800.1 | Wheat | golgi, plasma membrane, plastid | 44.08 | 44.71 |
TraesCS5B01G125000.1 | Wheat | cytosol, extracellular, plasma membrane | 36.97 | 44.57 |
CDY55755 | Canola | plasma membrane | 44.55 | 44.13 |
GSMUA_Achr9P08960_001 | Banana | plasma membrane | 43.6 | 43.81 |
TraesCS5B01G124900.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 43.13 | 43.75 |
GSMUA_Achr6P35580_001 | Banana | cytosol, extracellular, plastid | 19.91 | 43.75 |
CDX81001 | Canola | plastid | 44.55 | 43.72 |
Bra005892.1-P | Field mustard | plasma membrane | 44.08 | 43.66 |
EES16682 | Sorghum | golgi, plasma membrane, plastid | 43.13 | 42.52 |
Os11t0157200-03 | Rice | plasma membrane | 42.18 | 42.38 |
AT5G05657.1 | Thale cress | plastid | 27.49 | 42.34 |
GSMUA_Achr8P34450_001 | Banana | plasma membrane | 41.71 | 42.11 |
GSMUA_AchrUn_... | Banana | cytosol, plasma membrane, plastid | 42.65 | 42.06 |
TraesCS5D01G133300.1 | Wheat | cytosol | 41.23 | 41.83 |
HORVU4Hr1G021190.1 | Barley | golgi, plasma membrane, plastid | 41.71 | 41.31 |
TraesCS4B01G115700.1 | Wheat | peroxisome, plasma membrane, plastid | 41.71 | 41.31 |
Os12t0159600-01 | Rice | plastid | 41.23 | 41.04 |
GSMUA_Achr9P29670_001 | Banana | cytosol, extracellular, mitochondrion, plasma membrane | 34.12 | 40.91 |
GSMUA_Achr7P03290_001 | Banana | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 41.23 | 40.85 |
TraesCS4D01G113300.1 | Wheat | peroxisome, plasma membrane, plastid | 41.23 | 40.85 |
Zm00001d041927_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 40.76 | 40.57 |
TraesCS4A01G199700.1 | Wheat | golgi, plasma membrane, plastid | 40.76 | 40.38 |
Zm00001d052776_P001 | Maize | extracellular | 40.28 | 39.91 |
HORVU7Hr1G078320.1 | Barley | cytosol | 40.28 | 39.35 |
TraesCS7D01G323900.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 40.28 | 39.35 |
TraesCS7A01G327200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 40.28 | 39.35 |
GSMUA_Achr10P... | Banana | plasma membrane | 39.34 | 39.34 |
TraesCS2B01G603000.1 | Wheat | cytosol, golgi, plasma membrane | 40.76 | 38.91 |
TraesCS7B01G227800.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 39.81 | 38.89 |
EES13132 | Sorghum | cytosol | 40.28 | 38.81 |
GSMUA_Achr11P... | Banana | cytosol, extracellular, mitochondrion, peroxisome | 32.7 | 38.55 |
Zm00001d023468_P001 | Maize | extracellular | 38.86 | 38.5 |
Zm00001d026664_P001 | Maize | extracellular | 40.28 | 38.46 |
TraesCS2A01G583600.1 | Wheat | cytosol, golgi, plasma membrane | 40.28 | 38.46 |
Zm00001d034977_P001 | Maize | cytosol, mitochondrion, peroxisome, plasma membrane | 38.86 | 38.32 |
EES08013 | Sorghum | golgi, plasma membrane, plastid | 38.86 | 38.32 |
Os04t0685400-01 | Rice | golgi, plasma membrane, plastid | 39.81 | 38.18 |
TraesCS2D01G596200.1 | Wheat | cytosol, golgi, plasma membrane | 39.81 | 38.01 |
GSMUA_Achr6P19500_001 | Banana | endoplasmic reticulum, plasma membrane | 37.91 | 37.91 |
EES14353 | Sorghum | cytosol, mitochondrion, peroxisome, plasma membrane | 37.91 | 37.38 |
Os08t0102700-01 | Rice | cytosol, peroxisome, plasma membrane | 39.81 | 37.0 |
HORVU2Hr1G123370.1 | Barley | cytosol, golgi, plasma membrane | 38.39 | 36.82 |
TraesCS5A01G125600.1 | Wheat | cytosol, peroxisome, plasma membrane | 38.39 | 36.32 |
CDX95339 | Canola | plasma membrane | 50.71 | 35.91 |
Os04t0416700-01 | Rice | golgi, plasma membrane | 36.97 | 35.45 |
TraesCS2B01G232700.1 | Wheat | endoplasmic reticulum, golgi, plasma membrane | 36.02 | 35.35 |
TraesCS2A01G205300.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 36.02 | 35.35 |
EES12138 | Sorghum | extracellular, golgi, plasma membrane | 36.97 | 35.29 |
TraesCS2D01G210700.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 35.55 | 34.88 |
PGSC0003DMT400001571 | Potato | endoplasmic reticulum, nucleus, plasma membrane | 34.6 | 34.27 |
HORVU5Hr1G040160.3 | Barley | golgi, peroxisome | 44.08 | 34.07 |
Zm00001d016733_P001 | Maize | extracellular, plasma membrane | 30.33 | 34.04 |
Zm00001d003751_P001 | Maize | extracellular, golgi, plasma membrane | 36.02 | 33.78 |
HORVU5Hr1G114220.1 | Barley | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane | 34.12 | 33.33 |
TraesCS5A01G484900.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.65 | 33.18 |
TraesCS5B01G498200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.65 | 33.18 |
TraesCS5D01G498400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 33.65 | 33.18 |
Os02t0538700-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 35.07 | 33.04 |
EES06921 | Sorghum | endoplasmic reticulum | 33.18 | 33.02 |
HORVU2Hr1G073830.1 | Barley | extracellular, plasma membrane | 33.65 | 32.87 |
Zm00001d025371_P001 | Maize | extracellular, golgi, plasma membrane | 34.6 | 32.59 |
TraesCS2A01G297700.1 | Wheat | extracellular, plasma membrane | 33.18 | 32.41 |
TraesCS2B01G313900.1 | Wheat | extracellular, plasma membrane | 33.18 | 32.41 |
TraesCS2D01G295700.1 | Wheat | extracellular, plasma membrane | 33.18 | 32.41 |
HORVU2Hr1G040910.1 | Barley | peroxisome | 35.55 | 31.51 |
HORVU2Hr1G066420.1 | Barley | mitochondrion, plastid | 23.22 | 24.62 |
PGSC0003DMT400029400 | Potato | cytosol, peroxisome, plastid, vacuole | 26.07 | 24.12 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400072342 | EnsemblPlantsGene:PGSC0003DMG400028151 | EntrezGene:102584448 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:LEA_2 | PANTHER:PTHR31415 | PANTHER:PTHR31415:SF2 | PFAM:PF03168 | PGSC:PGSC0003DMG400028151 | RefSeq:XP_006339162.1 |
SEG:seg | TMHMM:TMhelix | UniParc:UPI000296CC43 | UniProt:M1CQ39 | MapMan:35.1 | : |
Description
VAMP protein SEC22 [Source:PGSC_GENE;Acc:PGSC0003DMG400028151]
Coordinates
chr10:-:56090820..56091798
Molecular Weight (calculated)
24108.2 Da
IEP (calculated)
10.005
GRAVY (calculated)
-0.153
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVKECTHHK DKKRKLVRRL FAGILIFLFV VLLTVLLVWA ILQPKKPRFI LQDATIFNFN VSAPNIFSTS IQITIYSRNP NDKIGVYYDK MKTYANYHKQ
101: QITYYTQIPS VYQGHKDVNI WSPFVFSNNV PISPLNGPDL KEDQQNGGVW LDFKIDGRVK WRVGTITTGH YHLHVTCTAY VPFGNHPGDG GLFVGNNAVK
201: YQLARSCDVS V
101: QITYYTQIPS VYQGHKDVNI WSPFVFSNNV PISPLNGPDL KEDQQNGGVW LDFKIDGRVK WRVGTITTGH YHLHVTCTAY VPFGNHPGDG GLFVGNNAVK
201: YQLARSCDVS V
001: MKDCENHGHS RRKLIRRIFW SIIFVLFIIF LTILLIWAIL QPSKPRFILQ DATVYAFNVS GNPPNLLTSN FQITLSSRNP NNKIGIYYDR LDVYATYRSQ
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
101: QITFPTSIPP TYQGHKDVDI WSPFVYGTSV PIAPFNGVSL DTDKDNGVVL LIIRADGRVR WKVGTFITGK YHLHVKCPAY INFGNKANGV IVGDNAVKYT
201: FTTSCSVSV
Arabidopsis Description
NHL1NDR1/HIN1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRN0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.