Factsheet for Zm00001d034977_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol, plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome, plasma membrane
Any Predictor:	mitochondrion, peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14353	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	97.2	97.2
TraesCS7D01G323900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	74.77	74.07
TraesCS7A01G327200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	74.77	74.07
HORVU7Hr1G078320.1	Barley	cytosol	74.3	73.61
TraesCS7B01G227800.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	74.3	73.61
Os08t0102700-01	Rice	cytosol, peroxisome, plasma membrane	76.17	71.81
Zm00001d026664_P001	Maize	extracellular	66.82	64.71
GSMUA_Achr10P...	Banana	plasma membrane	51.4	52.13
GSMUA_Achr9P29670_001	Banana	cytosol, extracellular, mitochondrion, plasma membrane	41.59	50.57
PGSC0003DMT400015090	Potato	plasma membrane	47.66	49.04
Solyc06g074040.1.1	Tomato	plasma membrane	46.73	48.08
GSMUA_Achr8P34450_001	Banana	plasma membrane	46.73	47.85
Zm00001d041927_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	47.2	47.64
GSMUA_Achr11P...	Banana	cytosol, extracellular, mitochondrion, peroxisome	39.72	47.49
Zm00001d023468_P001	Maize	extracellular	46.73	46.95
GSMUA_Achr6P19500_001	Banana	endoplasmic reticulum, plasma membrane	46.26	46.92
PGSC0003DMT400050538	Potato	plasma membrane	44.39	45.45
GSMUA_Achr7P03290_001	Banana	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	44.86	45.07
Solyc11g068890.1.1	Tomato	plasma membrane	43.93	44.98
CDY69513	Canola	plasma membrane	42.52	44.17
Bra035001.1-P	Field mustard	plasma membrane	42.52	44.17
KRH72197	Soybean	plasma membrane	42.52	43.96
AT5G22200.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	42.99	43.81
CDY08687	Canola	plasma membrane	42.06	43.69
AT3G44220.1	Thale cress	plasma membrane	42.06	43.69
VIT_08s0007g02350.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	42.06	43.48
KRG96252	Soybean	plasma membrane	42.52	43.33
KRH32836	Soybean	plasma membrane	41.12	42.11
CDY29084	Canola	mitochondrion	33.64	41.86
CDX90600	Canola	plasma membrane	40.65	41.83
Bra033428.1-P	Field mustard	cytosol	40.65	41.83
Bra012801.1-P	Field mustard	plasma membrane	40.65	41.83
CDY72430	Canola	cytosol	40.65	41.83
Zm00001d052776_P001	Maize	extracellular	41.59	41.78
KRH26671	Soybean	plasma membrane	42.99	41.63
Zm00001d016733_P001	Maize	extracellular, plasma membrane	36.45	41.49
AT2G35960.1	Thale cress	endoplasmic reticulum, golgi, plasma membrane	40.19	40.95
AT3G52470.1	Thale cress	extracellular, plasma membrane	39.72	40.87
Bra006927.1-P	Field mustard	cytosol	39.72	40.87
AT3G11660.1	Thale cress	plasma membrane	39.72	40.67
KRH30370	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	40.65	40.65
CDY68967	Canola	cytosol	39.25	40.38
CDY69198	Canola	cytosol	39.25	40.38
KRH25304	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	40.19	40.38
AT5G06330.1	Thale cress	plasma membrane	38.78	40.1
VIT_06s0080g01200.t01	Wine grape	plasma membrane	38.78	39.9
Solyc01g007220.2.1	Tomato	extracellular, plasma membrane	39.25	39.81
PGSC0003DMT400042351	Potato	extracellular, plasma membrane	39.25	39.81
CDY32068	Canola	plasma membrane	38.32	39.81
Bra038671.1-P	Field mustard	plasma membrane	38.78	39.34
CDY08506	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	38.78	39.15
Bra034822.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, plastid	38.78	39.15
Bra002396.1-P	Field mustard	plasma membrane	37.85	39.13
KRH22643	Soybean	plasma membrane	39.72	38.99
PGSC0003DMT400072342	Potato	extracellular, plasma membrane	38.32	38.86
CDY01043	Canola	mitochondrion	38.32	38.68
CDX92375	Canola	plasma membrane	37.38	38.65
CDY40419	Canola	plasma membrane	37.38	38.46
Bra017276.1-P	Field mustard	plasma membrane	37.38	38.46
Zm00001d025371_P001	Maize	extracellular, golgi, plasma membrane	40.19	38.39
Zm00001d003751_P001	Maize	extracellular, golgi, plasma membrane	40.19	38.22
CDX98590	Canola	plasma membrane	36.92	38.16
AT4G09590.1	Thale cress	cytosol, plasma membrane, vacuole	36.45	36.97
AT2G35970.1	Thale cress	cytosol, endoplasmic reticulum, plasma membrane	36.45	36.97
CDY09123	Canola	plasma membrane	35.98	36.84
CDY55755	Canola	plasma membrane	36.45	36.62
CDY35671	Canola	plasma membrane	35.51	36.36
Bra005892.1-P	Field mustard	plasma membrane	35.98	36.15
Bra020177.1-P	Field mustard	plasma membrane	35.05	35.89
KRH67997	Soybean	plastid	42.06	35.71
CDX81001	Canola	plastid	35.05	34.88
AT5G05657.1	Thale cress	plastid	21.96	34.31
CDX95339	Canola	plasma membrane	39.72	28.52
Zm00001d021289_P001	Maize	mitochondrion	26.17	25.57
Zm00001d037915_P001	Maize	cytosol, peroxisome, plastid	27.57	22.52

Protein Annotations

EMBL:EU967757	EnsemblPlants:Zm00001d034977_P001	EnsemblPlants:Zm00001d034977_T001	EnsemblPlantsGene:Zm00001d034977	EntrezGene:100284275	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:LEA_2	PANTHER:PTHR31415	PANTHER:PTHR31415:SF7	PFAM:PF03168
ProteinID:AQK78027.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000182E367	UniProt:B6TRZ2	MapMan:35.1

Description

VAMP protein SEC22

Coordinates

chr6:-:663669..664313

Molecular Weight (calculated)

23857.0 Da

IEP (calculated)

8.955

GRAVY (calculated)

0.239

Length

214 amino acids

Sequence
(BLAST)

001: MSIKYCDQHK DCERQRLYRR FCAALVGVIV LVLLIVLIVW LVLRPTKPRF FLNDVSIVCI NVSSASYLTV TMQATLASRN TNDRVGIYYD RADVYAEYRA
101: MQITVPTALP PFFQPPNDAA VWAPFLSASN VPLPPYLATA LTQDETAGYL LVTIRVDGWI RWKAGAFITS HYHLRVRCPA LLTVNDGQGS YGSNAGGGLG
201: YFKFQRAAPC IVDV

Best Arabidopsis Sequence Match ( AT3G44220.1 )
(BLAST)

001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV

Arabidopsis Description

At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.