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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • golgi 2
  • plasma membrane 3
  • plastid 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:golgi
Plant-mPloc:extracellular, nucleus, plasma membrane, plastid
PProwler:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G125000.1 Wheat cytosol, extracellular, plasma membrane 73.83 90.29
TraesCS5A01G125800.1 Wheat golgi, plasma membrane, plastid 86.92 89.42
TraesCS5D01G133400.1 Wheat golgi, plasma membrane, plastid 86.45 88.94
Zm00001d023468_P001 Maize extracellular 87.38 87.79
Os12t0159600-01 Rice plastid 84.11 84.91
TraesCS5D01G133300.1 Wheat cytosol 79.44 81.73
TraesCS5B01G124900.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 77.1 79.33
EES08013 Sorghum golgi, plasma membrane, plastid 75.7 75.7
TraesCS5A01G125600.1 Wheat cytosol, peroxisome, plasma membrane 71.5 68.61
HORVU5Hr1G040160.3 Barley golgi, peroxisome 86.45 67.77
GSMUA_Achr6P35580_001 Banana cytosol, extracellular, plastid 28.04 62.5
GSMUA_Achr9P08960_001 Banana plasma membrane 56.54 57.62
EES06921 Sorghum endoplasmic reticulum 52.34 52.83
EES12138 Sorghum extracellular, golgi, plasma membrane 53.27 51.58
PGSC0003DMT400015090 Potato plasma membrane 48.6 50.0
Solyc06g074040.1.1 Tomato plasma membrane 48.13 49.52
PGSC0003DMT400050538 Potato plasma membrane 48.13 49.28
CDY29084 Canola mitochondrion 39.25 48.84
EES14353 Sorghum cytosol, mitochondrion, peroxisome, plasma membrane 48.6 48.6
Solyc11g068890.1.1 Tomato plasma membrane 47.2 48.33
EES13132 Sorghum cytosol 49.07 47.95
VIT_08s0007g02350.t01 Wine grape cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 46.26 47.83
VIT_06s0080g01200.t01 Wine grape plasma membrane 46.26 47.6
CDY08687 Canola plasma membrane 45.33 47.09
Bra035001.1-P Field mustard plasma membrane 45.33 47.09
CDY69513 Canola plasma membrane 45.33 47.09
CDX90600 Canola plasma membrane 44.86 46.15
Bra002396.1-P Field mustard plasma membrane 44.39 45.89
Bra012801.1-P Field mustard plasma membrane 44.39 45.67
Bra006927.1-P Field mustard cytosol 44.39 45.67
AT3G44220.1 Thale cress plasma membrane 43.93 45.63
AT5G22200.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 44.39 45.24
CDY72430 Canola cytosol 43.93 45.19
CDY69198 Canola cytosol 43.93 45.19
CDX92375 Canola plasma membrane 43.46 44.93
AT5G06330.1 Thale cress plasma membrane 43.46 44.93
CDY68967 Canola cytosol 43.46 44.71
Bra033428.1-P Field mustard cytosol 43.46 44.71
AT3G52470.1 Thale cress extracellular, plasma membrane 43.46 44.71
AT3G11660.1 Thale cress plasma membrane 43.46 44.5
CDX98590 Canola plasma membrane 42.99 44.44
KRH30370 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.39 44.39
Bra034822.1-P Field mustard extracellular, mitochondrion, plasma membrane, plastid 43.46 43.87
CDY08506 Canola endoplasmic reticulum, mitochondrion, plasma membrane, plastid 43.46 43.87
Bra038671.1-P Field mustard plasma membrane 42.99 43.6
KRH25304 Soybean endoplasmic reticulum, mitochondrion, plasma membrane, plastid 42.99 43.19
PGSC0003DMT400072342 Potato extracellular, plasma membrane 42.52 43.13
Solyc01g007220.2.1 Tomato extracellular, plasma membrane 42.52 43.13
CDY01043 Canola mitochondrion 42.52 42.92
KRG96252 Soybean plasma membrane 42.06 42.86
PGSC0003DMT400042351 Potato extracellular, plasma membrane 42.06 42.65
KRH26671 Soybean plasma membrane 43.93 42.53
KRH72197 Soybean plasma membrane 40.19 41.55
AT2G35960.1 Thale cress endoplasmic reticulum, golgi, plasma membrane 40.65 41.43
KRH22643 Soybean plasma membrane 42.06 41.28
CDY35671 Canola plasma membrane 39.72 40.67
CDY32068 Canola plasma membrane 38.78 40.29
KRH32836 Soybean plasma membrane 39.25 40.19
Bra017276.1-P Field mustard plasma membrane 38.78 39.9
CDY40419 Canola plasma membrane 38.78 39.9
CDY09123 Canola plasma membrane 38.32 39.23
AT2G35970.1 Thale cress cytosol, endoplasmic reticulum, plasma membrane 38.32 38.86
AT4G09590.1 Thale cress cytosol, plasma membrane, vacuole 37.85 38.39
Bra020177.1-P Field mustard plasma membrane 37.38 38.28
CDX81001 Canola plastid 37.85 37.67
CDY55755 Canola plasma membrane 37.38 37.56
Bra005892.1-P Field mustard plasma membrane 36.92 37.09
KRH67997 Soybean plastid 42.52 36.11
AT5G05657.1 Thale cress plastid 22.43 35.04
CDX95339 Canola plasma membrane 42.52 30.54
EER99240 Sorghum golgi 26.64 26.03
OQU84133 Sorghum endoplasmic reticulum, golgi, nucleus 28.04 25.86
OQU77870 Sorghum plastid 29.44 19.75
Protein Annotations
MapMan:35.1EntrezGene:8073464UniProt:C5YS71EnsemblPlants:EES16682ProteinID:EES16682ProteinID:EES16682.1
GO:GO:0003674GO:GO:0004871GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006950
GO:GO:0006952GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009506GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0046658InterPro:LEA_2PFAM:PF03168PANTHER:PTHR31415
PANTHER:PTHR31415:SF11EnsemblPlantsGene:SORBI_3008G043500unigene:Sbi.5223TMHMM:TMhelixUniParc:UPI0001A8861ARefSeq:XP_002442844.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr8:-:4262375..4263019
Molecular Weight (calculated)
23408.1 Da
IEP (calculated)
8.203
GRAVY (calculated)
0.140
Length
214 amino acids
Sequence
(BLAST)
001: MSKDCGNHGD DDLRRSCRRL LAILLVLALL VALIALIIYL VLRPTHPRFF LQDASLRQLD LSNTTTTTSA AGALSTTLQV TVASRNPNDK VGVYYDRLDV
101: YASYKYQQIT VAASLPAVYQ GHGDVDVWSP VLSGPDVPFA PYLADALRQD CQAGYLILQV KIDGRVRWKV GSWISGHYHL FVTCPAFLVT TGGNGAPGAS
201: GFKFQTTTYC HVEV
Best Arabidopsis Sequence Match ( AT3G44220.1 )
(BLAST)
001: MTEKECEHHH DEDEKMRKRI GALVLGFLAA VLFVVFLVWA ILHPHGPRFV LQDATIYAFN VSQPNYLTSN LQVTLSSRNP NDKIGIFYDR LDIYASYRNQ
101: QVTLATLLPA TYQGHLDVTI WSPFLYGTTV PVAPYFSPAL SQDLTAGMVL LNIKIDGWVR WKVGTWVSGR YRLHVNCPAY ITLAGHFSGD GPAVKYQLVQ
201: RCAVDV
Arabidopsis Description
At3g44220 [Source:UniProtKB/TrEMBL;Acc:Q9LXM6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.